Strain Fitness in Escherichia coli BL21 around ECD_01405

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01402 and ECD_01403 are separated by 85 nucleotidesECD_01403 and ECD_01404 are separated by 0 nucleotidesECD_01404 and ECD_01405 overlap by 4 nucleotidesECD_01405 and ECD_01406 are separated by 180 nucleotides ECD_01402: ECD_01402 - DUF2566 family protein, at 1,471,452 to 1,471,625 _01402 ECD_01403: ECD_01403 - DUF2526 family protein, at 1,471,711 to 1,471,944 _01403 ECD_01404: ECD_01404 - DUF606 family inner membrane protein, at 1,471,945 to 1,472,394 _01404 ECD_01405: ECD_01405 - methionine N-acyltransferase; L-amino acid N-acyltransferase, at 1,472,391 to 1,472,909 _01405 ECD_01406: ECD_01406 - curcumin/dihydrocurcumin reductase, NADPH-dependent, at 1,473,090 to 1,474,127 _01406 Position (kb) 1472 1473Strain fitness (log2 ratio) -2 -1 0 1 2at 1471.630 kb on + strandat 1471.710 kb on + strandat 1471.787 kb on + strand, within ECD_01403at 1471.787 kb on + strand, within ECD_01403at 1471.817 kb on + strand, within ECD_01403at 1472.173 kb on - strand, within ECD_01404at 1472.173 kb on - strand, within ECD_01404at 1472.173 kb on - strand, within ECD_01404at 1472.746 kb on - strand, within ECD_01405at 1472.840 kb on - strand, within ECD_01405at 1472.840 kb on - strand, within ECD_01405at 1473.053 kb on + strandat 1473.246 kb on + strand, within ECD_01406

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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1,471,630 + +1.4
1,471,710 + +1.1
1,471,787 + ECD_01403 0.32 -0.1
1,471,787 + ECD_01403 0.32 +0.7
1,471,817 + ECD_01403 0.45 -0.4
1,472,173 - ECD_01404 0.51 +1.6
1,472,173 - ECD_01404 0.51 +0.7
1,472,173 - ECD_01404 0.51 -0.3
1,472,746 - ECD_01405 0.68 +1.7
1,472,840 - ECD_01405 0.87 +1.8
1,472,840 - ECD_01405 0.87 -1.8
1,473,053 + +0.1
1,473,246 + ECD_01406 0.15 +0.7

Or see this region's nucleotide sequence