Strain Fitness in Escherichia coli BL21 around ECD_00978

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00976 and ECD_00977 are separated by 18 nucleotidesECD_00977 and ECD_00978 overlap by 4 nucleotidesECD_00978 and ECD_00979 overlap by 4 nucleotidesECD_00979 and ECD_00980 overlap by 4 nucleotides ECD_00976: ECD_00976 - hydrogenase 1, large subunit, at 1,038,343 to 1,040,136 _00976 ECD_00977: ECD_00977 - hydrogenase 1, b-type cytochrome subunit, at 1,040,155 to 1,040,862 _00977 ECD_00978: ECD_00978 - hydrogenase 1 maturation protease, at 1,040,859 to 1,041,446 _00978 ECD_00979: ECD_00979 - putative HyaA chaperone, at 1,041,443 to 1,041,841 _00979 ECD_00980: ECD_00980 - hydrogenase-1 protein nickel incorporation factor, at 1,041,838 to 1,042,695 _00980 Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -2 -1 0 1 2at 1040.189 kb on - strandat 1040.309 kb on - strand, within ECD_00977at 1040.309 kb on - strand, within ECD_00977at 1040.317 kb on + strand, within ECD_00977at 1040.318 kb on - strand, within ECD_00977at 1040.318 kb on - strand, within ECD_00977at 1040.319 kb on + strand, within ECD_00977at 1040.488 kb on + strand, within ECD_00977at 1040.522 kb on + strand, within ECD_00977at 1040.752 kb on + strand, within ECD_00977at 1040.844 kb on + strandat 1040.971 kb on - strand, within ECD_00978at 1040.993 kb on + strand, within ECD_00978at 1040.993 kb on + strand, within ECD_00978at 1041.093 kb on + strand, within ECD_00978at 1041.562 kb on - strand, within ECD_00979at 1041.644 kb on + strand, within ECD_00979at 1041.646 kb on + strand, within ECD_00979at 1041.646 kb on + strand, within ECD_00979at 1041.646 kb on + strand, within ECD_00979at 1041.647 kb on - strand, within ECD_00979at 1041.647 kb on - strand, within ECD_00979at 1041.647 kb on - strand, within ECD_00979at 1041.770 kb on - strand, within ECD_00979at 1042.098 kb on + strand, within ECD_00980at 1042.341 kb on - strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.370 kb on + strand, within ECD_00980at 1042.371 kb on - strand, within ECD_00980

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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1,040,189 - -0.5
1,040,309 - ECD_00977 0.22 +0.4
1,040,309 - ECD_00977 0.22 +2.5
1,040,317 + ECD_00977 0.23 -0.9
1,040,318 - ECD_00977 0.23 -2.1
1,040,318 - ECD_00977 0.23 -0.8
1,040,319 + ECD_00977 0.23 +0.3
1,040,488 + ECD_00977 0.47 -0.1
1,040,522 + ECD_00977 0.52 +0.1
1,040,752 + ECD_00977 0.84 -0.4
1,040,844 + +0.3
1,040,971 - ECD_00978 0.19 -0.3
1,040,993 + ECD_00978 0.23 -1.1
1,040,993 + ECD_00978 0.23 -1.1
1,041,093 + ECD_00978 0.40 -0.4
1,041,562 - ECD_00979 0.30 -1.7
1,041,644 + ECD_00979 0.50 +0.7
1,041,646 + ECD_00979 0.51 +0.1
1,041,646 + ECD_00979 0.51 -1.1
1,041,646 + ECD_00979 0.51 +0.1
1,041,647 - ECD_00979 0.51 -0.6
1,041,647 - ECD_00979 0.51 +0.7
1,041,647 - ECD_00979 0.51 +0.8
1,041,770 - ECD_00979 0.82 -0.7
1,042,098 + ECD_00980 0.30 -0.0
1,042,341 - ECD_00980 0.59 -0.8
1,042,370 + ECD_00980 0.62 +0.0
1,042,370 + ECD_00980 0.62 +0.9
1,042,370 + ECD_00980 0.62 -1.4
1,042,370 + ECD_00980 0.62 +0.1
1,042,371 - ECD_00980 0.62 +0.5

Or see this region's nucleotide sequence