Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00599 and ECD_00600 are separated by 100 nucleotides ECD_00600 and ECD_00601 are separated by 109 nucleotides
ECD_00599: ECD_00599 - octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase, at 621,999 to 622,640
_00599
ECD_00600: ECD_00600 - UPF0250 family protein, at 622,741 to 623,004
_00600
ECD_00601: ECD_00601 - D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5), at 623,114 to 624,325
_00601
Position (kb) 622
623
624 Strain fitness (log2 ratio) -1
0
1
2 at 622.683 kb on - strand at 622.685 kb on - strand at 622.785 kb on - strand, within ECD_00600 at 623.028 kb on - strand at 623.032 kb on - strand at 623.032 kb on - strand at 623.073 kb on - strand at 623.073 kb on - strand at 623.073 kb on - strand at 623.073 kb on - strand at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.305 kb on - strand, within ECD_00601 at 623.349 kb on + strand, within ECD_00601 at 623.350 kb on - strand, within ECD_00601 at 623.712 kb on - strand, within ECD_00601 at 623.763 kb on + strand, within ECD_00601 at 623.790 kb on - strand, within ECD_00601 at 623.790 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.833 kb on - strand, within ECD_00601 at 623.923 kb on + strand, within ECD_00601
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 622,683 - +0.4 622,685 - +0.4 622,785 - ECD_00600 0.17 +2.2 623,028 - +0.3 623,032 - -0.7 623,032 - +1.1 623,073 - +1.2 623,073 - -0.5 623,073 - +0.2 623,073 - -0.9 623,305 - ECD_00601 0.16 +0.7 623,305 - ECD_00601 0.16 +0.9 623,305 - ECD_00601 0.16 +0.7 623,305 - ECD_00601 0.16 -0.4 623,305 - ECD_00601 0.16 +0.6 623,305 - ECD_00601 0.16 +0.4 623,349 + ECD_00601 0.19 +0.3 623,350 - ECD_00601 0.19 +0.4 623,712 - ECD_00601 0.49 +0.4 623,763 + ECD_00601 0.54 +0.2 623,790 - ECD_00601 0.56 -0.9 623,790 - ECD_00601 0.56 +0.5 623,833 - ECD_00601 0.59 -0.0 623,833 - ECD_00601 0.59 +0.2 623,833 - ECD_00601 0.59 +0.5 623,923 + ECD_00601 0.67 -0.7
Or see this region's nucleotide sequence