Strain Fitness in Escherichia coli BL21 around ECD_00335

Experiment: Bas26

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00333 and ECD_00334 are separated by 119 nucleotidesECD_00334 and ECD_00335 are separated by 182 nucleotidesECD_00335 and ECD_00336 are separated by 49 nucleotidesECD_00336 and ECD_00337 are separated by 257 nucleotides ECD_00333: ECD_00333 - pyrroline-5-carboxylate reductase, NAD(P)-binding, at 369,460 to 370,269 _00333 ECD_00334: ECD_00334 - UPF0178 family protein, at 370,389 to 370,847 _00334 ECD_00335: ECD_00335 - shikimate kinase II, at 371,030 to 371,554 _00335 ECD_00336: ECD_00336 - OxyR-regulated conserved protein, at 371,604 to 371,795 _00336 ECD_00337: ECD_00337 - AroM family protein, at 372,053 to 372,730 _00337 Position (kb) 371 372Strain fitness (log2 ratio) -1 0 1at 370.166 kb on + strand, within ECD_00333at 370.167 kb on - strand, within ECD_00333at 370.167 kb on - strand, within ECD_00333at 370.249 kb on - strandat 370.322 kb on + strandat 370.322 kb on + strandat 370.332 kb on + strandat 370.389 kb on - strandat 370.461 kb on - strand, within ECD_00334at 370.483 kb on + strand, within ECD_00334at 370.613 kb on + strand, within ECD_00334at 370.615 kb on + strand, within ECD_00334at 370.677 kb on + strand, within ECD_00334at 370.722 kb on - strand, within ECD_00334at 370.732 kb on + strand, within ECD_00334at 370.733 kb on - strand, within ECD_00334at 370.733 kb on - strand, within ECD_00334at 370.767 kb on - strand, within ECD_00334at 370.881 kb on - strandat 371.012 kb on + strandat 371.155 kb on + strand, within ECD_00335at 371.257 kb on + strand, within ECD_00335at 371.454 kb on + strand, within ECD_00335at 371.473 kb on + strand, within ECD_00335at 371.474 kb on - strand, within ECD_00335at 371.569 kb on + strandat 371.570 kb on - strandat 371.592 kb on + strandat 371.592 kb on + strandat 371.593 kb on - strandat 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.637 kb on + strand, within ECD_00336at 371.638 kb on - strand, within ECD_00336at 371.639 kb on + strand, within ECD_00336at 371.639 kb on + strand, within ECD_00336at 371.639 kb on + strand, within ECD_00336at 371.640 kb on - strand, within ECD_00336at 371.641 kb on + strand, within ECD_00336at 371.641 kb on + strand, within ECD_00336at 371.642 kb on - strand, within ECD_00336at 371.642 kb on - strand, within ECD_00336at 371.642 kb on - strand, within ECD_00336at 371.708 kb on + strand, within ECD_00336at 371.878 kb on + strandat 371.974 kb on + strandat 371.974 kb on + strandat 371.983 kb on + strandat 371.983 kb on + strandat 371.984 kb on - strandat 371.984 kb on - strandat 372.090 kb on + strandat 372.090 kb on + strandat 372.090 kb on + strandat 372.095 kb on - strandat 372.095 kb on - strandat 372.142 kb on + strand, within ECD_00337at 372.142 kb on + strand, within ECD_00337at 372.172 kb on - strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.237 kb on + strand, within ECD_00337at 372.238 kb on - strand, within ECD_00337at 372.238 kb on - strand, within ECD_00337at 372.334 kb on + strand, within ECD_00337at 372.335 kb on - strand, within ECD_00337at 372.337 kb on - strand, within ECD_00337at 372.339 kb on + strand, within ECD_00337at 372.365 kb on - strand, within ECD_00337at 372.427 kb on + strand, within ECD_00337

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas26
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370,166 + ECD_00333 0.87 +0.3
370,167 - ECD_00333 0.87 -1.5
370,167 - ECD_00333 0.87 -0.5
370,249 - +0.9
370,322 + +1.1
370,322 + -1.4
370,332 + +0.6
370,389 - +0.5
370,461 - ECD_00334 0.16 -0.5
370,483 + ECD_00334 0.20 -0.7
370,613 + ECD_00334 0.49 +0.5
370,615 + ECD_00334 0.49 -0.1
370,677 + ECD_00334 0.63 -0.8
370,722 - ECD_00334 0.73 -0.4
370,732 + ECD_00334 0.75 -0.3
370,733 - ECD_00334 0.75 +0.1
370,733 - ECD_00334 0.75 +1.0
370,767 - ECD_00334 0.82 +0.4
370,881 - +0.1
371,012 + -0.1
371,155 + ECD_00335 0.24 -0.3
371,257 + ECD_00335 0.43 +0.3
371,454 + ECD_00335 0.81 -1.6
371,473 + ECD_00335 0.84 -0.5
371,474 - ECD_00335 0.85 -1.7
371,569 + -1.1
371,570 - +0.7
371,592 + -0.1
371,592 + +0.6
371,593 - -0.7
371,637 + ECD_00336 0.17 +0.1
371,637 + ECD_00336 0.17 -1.2
371,637 + ECD_00336 0.17 -0.3
371,637 + ECD_00336 0.17 -0.3
371,637 + ECD_00336 0.17 +0.2
371,637 + ECD_00336 0.17 +0.3
371,637 + ECD_00336 0.17 -0.2
371,638 - ECD_00336 0.18 -1.3
371,639 + ECD_00336 0.18 +0.7
371,639 + ECD_00336 0.18 -0.2
371,639 + ECD_00336 0.18 -0.3
371,640 - ECD_00336 0.19 +1.0
371,641 + ECD_00336 0.19 -1.5
371,641 + ECD_00336 0.19 +0.0
371,642 - ECD_00336 0.20 -0.2
371,642 - ECD_00336 0.20 +0.4
371,642 - ECD_00336 0.20 +0.1
371,708 + ECD_00336 0.54 -1.2
371,878 + -0.2
371,974 + -0.4
371,974 + -1.0
371,983 + -0.0
371,983 + -0.8
371,984 - +0.2
371,984 - -1.0
372,090 + +0.4
372,090 + +0.7
372,090 + +1.3
372,095 - +0.8
372,095 - +1.1
372,142 + ECD_00337 0.13 -0.4
372,142 + ECD_00337 0.13 -0.4
372,172 - ECD_00337 0.18 -0.6
372,237 + ECD_00337 0.27 -0.1
372,237 + ECD_00337 0.27 +0.6
372,237 + ECD_00337 0.27 -0.1
372,238 - ECD_00337 0.27 -1.5
372,238 - ECD_00337 0.27 -0.0
372,334 + ECD_00337 0.41 -0.4
372,335 - ECD_00337 0.42 -0.8
372,337 - ECD_00337 0.42 +0.9
372,339 + ECD_00337 0.42 -0.2
372,365 - ECD_00337 0.46 +0.1
372,427 + ECD_00337 0.55 +0.4

Or see this region's nucleotide sequence