Experiment: Bas26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00064 and ECD_00065 are separated by 10 nucleotides ECD_00065 and ECD_00066 are separated by 338 nucleotides
ECD_00064: ECD_00064 - L-arabinose isomerase, at 69,640 to 71,142
_00064
ECD_00065: ECD_00065 - L-ribulokinase, at 71,153 to 72,853
_00065
ECD_00066: ECD_00066 - ara regulon transcriptional activator; autorepressor, at 73,192 to 74,070
_00066
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.265 kb on - strand, within ECD_00064 at 70.434 kb on - strand, within ECD_00064 at 70.446 kb on - strand, within ECD_00064 at 70.521 kb on + strand, within ECD_00064 at 70.521 kb on + strand, within ECD_00064 at 70.522 kb on - strand, within ECD_00064 at 70.561 kb on - strand, within ECD_00064 at 70.726 kb on - strand, within ECD_00064 at 70.726 kb on - strand, within ECD_00064 at 70.782 kb on + strand, within ECD_00064 at 70.797 kb on + strand, within ECD_00064 at 70.937 kb on + strand, within ECD_00064 at 70.956 kb on + strand, within ECD_00064 at 71.038 kb on - strand at 71.038 kb on - strand at 71.087 kb on + strand at 71.123 kb on + strand at 71.155 kb on - strand at 71.156 kb on + strand at 71.156 kb on + strand at 71.157 kb on - strand at 71.157 kb on - strand at 71.157 kb on - strand at 71.157 kb on - strand at 71.157 kb on - strand at 71.205 kb on + strand at 71.206 kb on - strand at 71.239 kb on - strand at 71.612 kb on - strand, within ECD_00065 at 71.829 kb on + strand, within ECD_00065 at 71.830 kb on - strand, within ECD_00065 at 71.830 kb on - strand, within ECD_00065 at 71.909 kb on - strand, within ECD_00065 at 71.909 kb on - strand, within ECD_00065 at 71.971 kb on + strand, within ECD_00065 at 71.971 kb on + strand, within ECD_00065 at 71.971 kb on + strand, within ECD_00065 at 71.995 kb on + strand, within ECD_00065 at 72.098 kb on + strand, within ECD_00065 at 72.098 kb on + strand, within ECD_00065 at 72.098 kb on + strand, within ECD_00065 at 72.235 kb on + strand, within ECD_00065 at 72.403 kb on - strand, within ECD_00065 at 72.418 kb on - strand, within ECD_00065 at 72.761 kb on + strand at 72.983 kb on - strand at 73.011 kb on - strand at 73.073 kb on + strand at 73.073 kb on + strand at 73.073 kb on + strand at 73.073 kb on + strand at 73.324 kb on + strand, within ECD_00066 at 73.324 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.326 kb on + strand, within ECD_00066 at 73.401 kb on + strand, within ECD_00066 at 73.402 kb on - strand, within ECD_00066 at 73.480 kb on + strand, within ECD_00066 at 73.480 kb on + strand, within ECD_00066 at 73.529 kb on + strand, within ECD_00066 at 73.744 kb on + strand, within ECD_00066 at 73.744 kb on + strand, within ECD_00066
Per-strain Table
Position Strand Gene LocusTag Fraction Bas26 remove 70,265 - ECD_00064 0.42 -1.1 70,434 - ECD_00064 0.53 +0.4 70,446 - ECD_00064 0.54 -0.9 70,521 + ECD_00064 0.59 +0.2 70,521 + ECD_00064 0.59 -0.4 70,522 - ECD_00064 0.59 -0.2 70,561 - ECD_00064 0.61 -0.4 70,726 - ECD_00064 0.72 -0.1 70,726 - ECD_00064 0.72 -0.5 70,782 + ECD_00064 0.76 -2.1 70,797 + ECD_00064 0.77 -0.3 70,937 + ECD_00064 0.86 +0.4 70,956 + ECD_00064 0.88 -0.2 71,038 - +0.0 71,038 - +0.7 71,087 + -0.1 71,123 + -0.5 71,155 - +0.2 71,156 + +0.3 71,156 + +0.6 71,157 - +0.3 71,157 - +0.3 71,157 - +0.1 71,157 - -0.4 71,157 - -0.9 71,205 + +0.1 71,206 - -0.3 71,239 - -0.7 71,612 - ECD_00065 0.27 +1.3 71,829 + ECD_00065 0.40 +0.1 71,830 - ECD_00065 0.40 +0.1 71,830 - ECD_00065 0.40 +0.2 71,909 - ECD_00065 0.44 +1.8 71,909 - ECD_00065 0.44 -0.8 71,971 + ECD_00065 0.48 +0.6 71,971 + ECD_00065 0.48 +1.2 71,971 + ECD_00065 0.48 -0.4 71,995 + ECD_00065 0.50 +0.3 72,098 + ECD_00065 0.56 +0.1 72,098 + ECD_00065 0.56 -0.3 72,098 + ECD_00065 0.56 -0.1 72,235 + ECD_00065 0.64 +0.8 72,403 - ECD_00065 0.73 +0.6 72,418 - ECD_00065 0.74 +1.5 72,761 + +0.1 72,983 - -1.1 73,011 - +0.2 73,073 + -1.1 73,073 + +0.3 73,073 + +0.1 73,073 + +1.5 73,324 + ECD_00066 0.15 +0.1 73,324 + ECD_00066 0.15 +0.3 73,326 + ECD_00066 0.15 +0.1 73,326 + ECD_00066 0.15 -0.7 73,326 + ECD_00066 0.15 +1.0 73,326 + ECD_00066 0.15 +0.5 73,401 + ECD_00066 0.24 +0.7 73,402 - ECD_00066 0.24 +0.8 73,480 + ECD_00066 0.33 +0.6 73,480 + ECD_00066 0.33 -0.3 73,529 + ECD_00066 0.38 -0.4 73,744 + ECD_00066 0.63 +0.4 73,744 + ECD_00066 0.63 +1.7
Or see this region's nucleotide sequence