Strain Fitness in Escherichia coli BL21 around ECD_04268

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04267 and ECD_04268 are separated by 210 nucleotidesECD_04268 and ECD_04269 are separated by 89 nucleotidesECD_04269 and ECD_04270 are separated by 84 nucleotides ECD_04267: ECD_04267 - energy-dependent translational throttle A, at 4,546,209 to 4,547,876 _04267 ECD_04268: ECD_04268 - lytic murein transglycosylase, soluble, at 4,548,087 to 4,550,024 _04268 ECD_04269: ECD_04269 - transcriptional repressor, tryptophan-binding, at 4,550,114 to 4,550,440 _04269 ECD_04270: ECD_04270 - non-canonical purine NTP phosphatase, ITPase/XTPase, at 4,550,525 to 4,551,046 _04270 Position (kb) 4548 4549 4550 4551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4547.146 kb on + strand, within ECD_04267at 4547.147 kb on - strand, within ECD_04267at 4547.165 kb on + strand, within ECD_04267at 4547.219 kb on - strand, within ECD_04267at 4547.232 kb on - strand, within ECD_04267at 4547.425 kb on - strand, within ECD_04267at 4547.425 kb on - strand, within ECD_04267at 4547.452 kb on - strand, within ECD_04267at 4547.462 kb on + strand, within ECD_04267at 4547.463 kb on - strand, within ECD_04267at 4547.554 kb on + strand, within ECD_04267at 4547.709 kb on - strand, within ECD_04267at 4547.709 kb on - strand, within ECD_04267at 4547.724 kb on - strandat 4547.739 kb on - strandat 4547.858 kb on + strandat 4547.858 kb on + strandat 4547.858 kb on + strandat 4547.859 kb on - strandat 4547.859 kb on - strandat 4547.931 kb on - strandat 4547.931 kb on - strandat 4547.976 kb on + strandat 4547.976 kb on + strandat 4547.977 kb on - strandat 4548.006 kb on + strandat 4548.029 kb on + strandat 4548.029 kb on + strandat 4548.029 kb on + strandat 4548.030 kb on - strandat 4548.030 kb on - strandat 4548.030 kb on - strandat 4548.036 kb on - strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.063 kb on + strandat 4548.064 kb on - strandat 4548.064 kb on - strandat 4548.067 kb on + strandat 4548.073 kb on + strandat 4548.345 kb on - strand, within ECD_04268at 4548.345 kb on - strand, within ECD_04268at 4548.443 kb on - strand, within ECD_04268at 4548.486 kb on - strand, within ECD_04268at 4548.486 kb on - strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.489 kb on + strand, within ECD_04268at 4548.490 kb on - strand, within ECD_04268at 4548.490 kb on - strand, within ECD_04268at 4548.490 kb on - strand, within ECD_04268at 4548.492 kb on + strand, within ECD_04268at 4548.592 kb on + strand, within ECD_04268at 4548.592 kb on + strand, within ECD_04268at 4548.592 kb on + strand, within ECD_04268at 4548.593 kb on - strand, within ECD_04268at 4548.596 kb on + strand, within ECD_04268at 4548.636 kb on + strand, within ECD_04268at 4548.641 kb on - strand, within ECD_04268at 4548.685 kb on + strand, within ECD_04268at 4548.761 kb on + strand, within ECD_04268at 4549.019 kb on + strand, within ECD_04268at 4549.082 kb on + strand, within ECD_04268at 4549.082 kb on + strand, within ECD_04268at 4549.083 kb on - strand, within ECD_04268at 4549.151 kb on - strand, within ECD_04268at 4549.258 kb on - strand, within ECD_04268at 4549.275 kb on - strand, within ECD_04268at 4549.524 kb on + strand, within ECD_04268at 4549.525 kb on - strand, within ECD_04268at 4549.545 kb on + strand, within ECD_04268at 4549.545 kb on + strand, within ECD_04268at 4549.546 kb on - strand, within ECD_04268at 4549.658 kb on + strand, within ECD_04268at 4549.659 kb on - strand, within ECD_04268at 4549.667 kb on + strand, within ECD_04268at 4549.668 kb on - strand, within ECD_04268at 4549.679 kb on + strand, within ECD_04268at 4549.709 kb on + strand, within ECD_04268at 4549.709 kb on + strand, within ECD_04268at 4549.710 kb on - strand, within ECD_04268at 4549.710 kb on - strand, within ECD_04268at 4549.764 kb on + strand, within ECD_04268at 4549.774 kb on - strand, within ECD_04268at 4549.774 kb on - strand, within ECD_04268at 4549.803 kb on - strand, within ECD_04268at 4549.822 kb on - strand, within ECD_04268at 4549.901 kb on + strandat 4549.926 kb on + strandat 4549.927 kb on - strandat 4549.927 kb on - strandat 4549.931 kb on - strandat 4549.948 kb on - strandat 4549.956 kb on + strandat 4549.957 kb on - strandat 4549.957 kb on - strandat 4549.957 kb on - strandat 4549.957 kb on - strandat 4549.959 kb on + strandat 4549.959 kb on + strandat 4550.035 kb on + strandat 4550.036 kb on - strandat 4550.040 kb on + strandat 4550.041 kb on - strandat 4550.045 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.110 kb on + strandat 4550.111 kb on - strandat 4550.111 kb on - strandat 4550.111 kb on - strandat 4550.113 kb on + strandat 4550.113 kb on + strandat 4550.191 kb on + strand, within ECD_04269at 4550.191 kb on + strand, within ECD_04269at 4550.220 kb on + strand, within ECD_04269at 4550.229 kb on + strand, within ECD_04269at 4550.230 kb on - strand, within ECD_04269at 4550.538 kb on + strandat 4550.540 kb on + strandat 4550.540 kb on + strandat 4550.540 kb on + strandat 4550.541 kb on - strandat 4550.666 kb on - strand, within ECD_04270at 4550.666 kb on - strand, within ECD_04270at 4550.741 kb on - strand, within ECD_04270at 4550.953 kb on + strand, within ECD_04270

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,547,146 + ECD_04267 0.56 +0.1
4,547,147 - ECD_04267 0.56 +0.3
4,547,165 + ECD_04267 0.57 -0.6
4,547,219 - ECD_04267 0.61 +1.5
4,547,232 - ECD_04267 0.61 +0.0
4,547,425 - ECD_04267 0.73 +1.1
4,547,425 - ECD_04267 0.73 +0.9
4,547,452 - ECD_04267 0.75 -0.3
4,547,462 + ECD_04267 0.75 -0.3
4,547,463 - ECD_04267 0.75 -1.0
4,547,554 + ECD_04267 0.81 +0.1
4,547,709 - ECD_04267 0.90 +0.6
4,547,709 - ECD_04267 0.90 +1.2
4,547,724 - +0.5
4,547,739 - -0.1
4,547,858 + +0.5
4,547,858 + +0.2
4,547,858 + +0.4
4,547,859 - +0.2
4,547,859 - +0.4
4,547,931 - -1.2
4,547,931 - +0.6
4,547,976 + -0.1
4,547,976 + -0.5
4,547,977 - -0.6
4,548,006 + -0.1
4,548,029 + +0.3
4,548,029 + +0.9
4,548,029 + -1.3
4,548,030 - -1.1
4,548,030 - -0.1
4,548,030 - +0.4
4,548,036 - -0.5
4,548,063 + -0.4
4,548,063 + -0.7
4,548,063 + +0.5
4,548,063 + -0.5
4,548,063 + +0.6
4,548,064 - +0.2
4,548,064 - -1.3
4,548,067 + -0.2
4,548,073 + +0.1
4,548,345 - ECD_04268 0.13 +1.3
4,548,345 - ECD_04268 0.13 -1.1
4,548,443 - ECD_04268 0.18 +2.8
4,548,486 - ECD_04268 0.21 +0.5
4,548,486 - ECD_04268 0.21 +0.3
4,548,489 + ECD_04268 0.21 +0.6
4,548,489 + ECD_04268 0.21 +1.0
4,548,489 + ECD_04268 0.21 +0.6
4,548,489 + ECD_04268 0.21 -0.3
4,548,489 + ECD_04268 0.21 -1.1
4,548,489 + ECD_04268 0.21 +0.7
4,548,489 + ECD_04268 0.21 -3.3
4,548,490 - ECD_04268 0.21 -0.6
4,548,490 - ECD_04268 0.21 -1.7
4,548,490 - ECD_04268 0.21 +1.2
4,548,492 + ECD_04268 0.21 +0.2
4,548,592 + ECD_04268 0.26 +0.4
4,548,592 + ECD_04268 0.26 -0.4
4,548,592 + ECD_04268 0.26 +0.7
4,548,593 - ECD_04268 0.26 -1.2
4,548,596 + ECD_04268 0.26 -0.1
4,548,636 + ECD_04268 0.28 -0.4
4,548,641 - ECD_04268 0.29 +0.1
4,548,685 + ECD_04268 0.31 -1.0
4,548,761 + ECD_04268 0.35 -1.1
4,549,019 + ECD_04268 0.48 +0.2
4,549,082 + ECD_04268 0.51 -0.6
4,549,082 + ECD_04268 0.51 -1.1
4,549,083 - ECD_04268 0.51 +2.1
4,549,151 - ECD_04268 0.55 -0.3
4,549,258 - ECD_04268 0.60 -0.2
4,549,275 - ECD_04268 0.61 -0.3
4,549,524 + ECD_04268 0.74 +0.0
4,549,525 - ECD_04268 0.74 +0.7
4,549,545 + ECD_04268 0.75 -2.6
4,549,545 + ECD_04268 0.75 +0.2
4,549,546 - ECD_04268 0.75 +0.6
4,549,658 + ECD_04268 0.81 -0.9
4,549,659 - ECD_04268 0.81 -0.2
4,549,667 + ECD_04268 0.82 -0.2
4,549,668 - ECD_04268 0.82 +0.8
4,549,679 + ECD_04268 0.82 -0.2
4,549,709 + ECD_04268 0.84 -0.3
4,549,709 + ECD_04268 0.84 +0.3
4,549,710 - ECD_04268 0.84 +0.3
4,549,710 - ECD_04268 0.84 -0.8
4,549,764 + ECD_04268 0.87 +0.3
4,549,774 - ECD_04268 0.87 +1.2
4,549,774 - ECD_04268 0.87 -0.1
4,549,803 - ECD_04268 0.89 -0.6
4,549,822 - ECD_04268 0.90 +0.0
4,549,901 + -0.5
4,549,926 + +0.2
4,549,927 - -0.9
4,549,927 - +0.1
4,549,931 - +0.6
4,549,948 - -0.3
4,549,956 + -1.5
4,549,957 - +1.0
4,549,957 - +1.3
4,549,957 - +0.2
4,549,957 - +1.2
4,549,959 + +0.7
4,549,959 + -0.9
4,550,035 + -2.1
4,550,036 - -0.9
4,550,040 + +0.4
4,550,041 - -0.4
4,550,045 + +0.4
4,550,110 + +1.6
4,550,110 + -0.2
4,550,110 + -0.6
4,550,110 + +0.3
4,550,110 + -0.1
4,550,110 + -0.4
4,550,110 + +0.9
4,550,110 + -1.4
4,550,111 - -0.2
4,550,111 - +0.4
4,550,111 - +1.5
4,550,113 + +0.8
4,550,113 + -1.1
4,550,191 + ECD_04269 0.24 +0.5
4,550,191 + ECD_04269 0.24 +0.4
4,550,220 + ECD_04269 0.32 -2.3
4,550,229 + ECD_04269 0.35 -0.7
4,550,230 - ECD_04269 0.35 -0.8
4,550,538 + +0.4
4,550,540 + -0.2
4,550,540 + +0.5
4,550,540 + +1.4
4,550,541 - -0.5
4,550,666 - ECD_04270 0.27 -0.1
4,550,666 - ECD_04270 0.27 +0.1
4,550,741 - ECD_04270 0.41 +0.4
4,550,953 + ECD_04270 0.82 -0.3

Or see this region's nucleotide sequence