Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04267 and ECD_04268 are separated by 210 nucleotides ECD_04268 and ECD_04269 are separated by 89 nucleotides ECD_04269 and ECD_04270 are separated by 84 nucleotides
ECD_04267: ECD_04267 - energy-dependent translational throttle A, at 4,546,209 to 4,547,876
_04267
ECD_04268: ECD_04268 - lytic murein transglycosylase, soluble, at 4,548,087 to 4,550,024
_04268
ECD_04269: ECD_04269 - transcriptional repressor, tryptophan-binding, at 4,550,114 to 4,550,440
_04269
ECD_04270: ECD_04270 - non-canonical purine NTP phosphatase, ITPase/XTPase, at 4,550,525 to 4,551,046
_04270
Position (kb)
4548
4549
4550
4551 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4547.146 kb on + strand, within ECD_04267 at 4547.147 kb on - strand, within ECD_04267 at 4547.165 kb on + strand, within ECD_04267 at 4547.219 kb on - strand, within ECD_04267 at 4547.232 kb on - strand, within ECD_04267 at 4547.425 kb on - strand, within ECD_04267 at 4547.425 kb on - strand, within ECD_04267 at 4547.452 kb on - strand, within ECD_04267 at 4547.462 kb on + strand, within ECD_04267 at 4547.463 kb on - strand, within ECD_04267 at 4547.554 kb on + strand, within ECD_04267 at 4547.709 kb on - strand, within ECD_04267 at 4547.709 kb on - strand, within ECD_04267 at 4547.724 kb on - strand at 4547.739 kb on - strand at 4547.858 kb on + strand at 4547.858 kb on + strand at 4547.858 kb on + strand at 4547.859 kb on - strand at 4547.859 kb on - strand at 4547.931 kb on - strand at 4547.931 kb on - strand at 4547.976 kb on + strand at 4547.976 kb on + strand at 4547.977 kb on - strand at 4548.006 kb on + strand at 4548.029 kb on + strand at 4548.029 kb on + strand at 4548.029 kb on + strand at 4548.030 kb on - strand at 4548.030 kb on - strand at 4548.030 kb on - strand at 4548.036 kb on - strand at 4548.063 kb on + strand at 4548.063 kb on + strand at 4548.063 kb on + strand at 4548.063 kb on + strand at 4548.063 kb on + strand at 4548.064 kb on - strand at 4548.064 kb on - strand at 4548.067 kb on + strand at 4548.073 kb on + strand at 4548.345 kb on - strand, within ECD_04268 at 4548.345 kb on - strand, within ECD_04268 at 4548.443 kb on - strand, within ECD_04268 at 4548.486 kb on - strand, within ECD_04268 at 4548.486 kb on - strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.489 kb on + strand, within ECD_04268 at 4548.490 kb on - strand, within ECD_04268 at 4548.490 kb on - strand, within ECD_04268 at 4548.490 kb on - strand, within ECD_04268 at 4548.492 kb on + strand, within ECD_04268 at 4548.592 kb on + strand, within ECD_04268 at 4548.592 kb on + strand, within ECD_04268 at 4548.592 kb on + strand, within ECD_04268 at 4548.593 kb on - strand, within ECD_04268 at 4548.596 kb on + strand, within ECD_04268 at 4548.636 kb on + strand, within ECD_04268 at 4548.641 kb on - strand, within ECD_04268 at 4548.685 kb on + strand, within ECD_04268 at 4548.761 kb on + strand, within ECD_04268 at 4549.019 kb on + strand, within ECD_04268 at 4549.082 kb on + strand, within ECD_04268 at 4549.082 kb on + strand, within ECD_04268 at 4549.083 kb on - strand, within ECD_04268 at 4549.151 kb on - strand, within ECD_04268 at 4549.258 kb on - strand, within ECD_04268 at 4549.275 kb on - strand, within ECD_04268 at 4549.524 kb on + strand, within ECD_04268 at 4549.525 kb on - strand, within ECD_04268 at 4549.545 kb on + strand, within ECD_04268 at 4549.545 kb on + strand, within ECD_04268 at 4549.546 kb on - strand, within ECD_04268 at 4549.658 kb on + strand, within ECD_04268 at 4549.659 kb on - strand, within ECD_04268 at 4549.667 kb on + strand, within ECD_04268 at 4549.668 kb on - strand, within ECD_04268 at 4549.679 kb on + strand, within ECD_04268 at 4549.709 kb on + strand, within ECD_04268 at 4549.709 kb on + strand, within ECD_04268 at 4549.710 kb on - strand, within ECD_04268 at 4549.710 kb on - strand, within ECD_04268 at 4549.764 kb on + strand, within ECD_04268 at 4549.774 kb on - strand, within ECD_04268 at 4549.774 kb on - strand, within ECD_04268 at 4549.803 kb on - strand, within ECD_04268 at 4549.822 kb on - strand, within ECD_04268 at 4549.901 kb on + strand at 4549.926 kb on + strand at 4549.927 kb on - strand at 4549.927 kb on - strand at 4549.931 kb on - strand at 4549.948 kb on - strand at 4549.956 kb on + strand at 4549.957 kb on - strand at 4549.957 kb on - strand at 4549.957 kb on - strand at 4549.957 kb on - strand at 4549.959 kb on + strand at 4549.959 kb on + strand at 4550.035 kb on + strand at 4550.036 kb on - strand at 4550.040 kb on + strand at 4550.041 kb on - strand at 4550.045 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.111 kb on - strand at 4550.111 kb on - strand at 4550.111 kb on - strand at 4550.113 kb on + strand at 4550.113 kb on + strand at 4550.191 kb on + strand, within ECD_04269 at 4550.191 kb on + strand, within ECD_04269 at 4550.220 kb on + strand, within ECD_04269 at 4550.229 kb on + strand, within ECD_04269 at 4550.230 kb on - strand, within ECD_04269 at 4550.538 kb on + strand at 4550.540 kb on + strand at 4550.540 kb on + strand at 4550.540 kb on + strand at 4550.541 kb on - strand at 4550.666 kb on - strand, within ECD_04270 at 4550.666 kb on - strand, within ECD_04270 at 4550.741 kb on - strand, within ECD_04270 at 4550.953 kb on + strand, within ECD_04270
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,547,146 + ECD_04267 0.56 +0.1 4,547,147 - ECD_04267 0.56 +0.3 4,547,165 + ECD_04267 0.57 -0.6 4,547,219 - ECD_04267 0.61 +1.5 4,547,232 - ECD_04267 0.61 +0.0 4,547,425 - ECD_04267 0.73 +1.1 4,547,425 - ECD_04267 0.73 +0.9 4,547,452 - ECD_04267 0.75 -0.3 4,547,462 + ECD_04267 0.75 -0.3 4,547,463 - ECD_04267 0.75 -1.0 4,547,554 + ECD_04267 0.81 +0.1 4,547,709 - ECD_04267 0.90 +0.6 4,547,709 - ECD_04267 0.90 +1.2 4,547,724 - +0.5 4,547,739 - -0.1 4,547,858 + +0.5 4,547,858 + +0.2 4,547,858 + +0.4 4,547,859 - +0.2 4,547,859 - +0.4 4,547,931 - -1.2 4,547,931 - +0.6 4,547,976 + -0.1 4,547,976 + -0.5 4,547,977 - -0.6 4,548,006 + -0.1 4,548,029 + +0.3 4,548,029 + +0.9 4,548,029 + -1.3 4,548,030 - -1.1 4,548,030 - -0.1 4,548,030 - +0.4 4,548,036 - -0.5 4,548,063 + -0.4 4,548,063 + -0.7 4,548,063 + +0.5 4,548,063 + -0.5 4,548,063 + +0.6 4,548,064 - +0.2 4,548,064 - -1.3 4,548,067 + -0.2 4,548,073 + +0.1 4,548,345 - ECD_04268 0.13 +1.3 4,548,345 - ECD_04268 0.13 -1.1 4,548,443 - ECD_04268 0.18 +2.8 4,548,486 - ECD_04268 0.21 +0.5 4,548,486 - ECD_04268 0.21 +0.3 4,548,489 + ECD_04268 0.21 +0.6 4,548,489 + ECD_04268 0.21 +1.0 4,548,489 + ECD_04268 0.21 +0.6 4,548,489 + ECD_04268 0.21 -0.3 4,548,489 + ECD_04268 0.21 -1.1 4,548,489 + ECD_04268 0.21 +0.7 4,548,489 + ECD_04268 0.21 -3.3 4,548,490 - ECD_04268 0.21 -0.6 4,548,490 - ECD_04268 0.21 -1.7 4,548,490 - ECD_04268 0.21 +1.2 4,548,492 + ECD_04268 0.21 +0.2 4,548,592 + ECD_04268 0.26 +0.4 4,548,592 + ECD_04268 0.26 -0.4 4,548,592 + ECD_04268 0.26 +0.7 4,548,593 - ECD_04268 0.26 -1.2 4,548,596 + ECD_04268 0.26 -0.1 4,548,636 + ECD_04268 0.28 -0.4 4,548,641 - ECD_04268 0.29 +0.1 4,548,685 + ECD_04268 0.31 -1.0 4,548,761 + ECD_04268 0.35 -1.1 4,549,019 + ECD_04268 0.48 +0.2 4,549,082 + ECD_04268 0.51 -0.6 4,549,082 + ECD_04268 0.51 -1.1 4,549,083 - ECD_04268 0.51 +2.1 4,549,151 - ECD_04268 0.55 -0.3 4,549,258 - ECD_04268 0.60 -0.2 4,549,275 - ECD_04268 0.61 -0.3 4,549,524 + ECD_04268 0.74 +0.0 4,549,525 - ECD_04268 0.74 +0.7 4,549,545 + ECD_04268 0.75 -2.6 4,549,545 + ECD_04268 0.75 +0.2 4,549,546 - ECD_04268 0.75 +0.6 4,549,658 + ECD_04268 0.81 -0.9 4,549,659 - ECD_04268 0.81 -0.2 4,549,667 + ECD_04268 0.82 -0.2 4,549,668 - ECD_04268 0.82 +0.8 4,549,679 + ECD_04268 0.82 -0.2 4,549,709 + ECD_04268 0.84 -0.3 4,549,709 + ECD_04268 0.84 +0.3 4,549,710 - ECD_04268 0.84 +0.3 4,549,710 - ECD_04268 0.84 -0.8 4,549,764 + ECD_04268 0.87 +0.3 4,549,774 - ECD_04268 0.87 +1.2 4,549,774 - ECD_04268 0.87 -0.1 4,549,803 - ECD_04268 0.89 -0.6 4,549,822 - ECD_04268 0.90 +0.0 4,549,901 + -0.5 4,549,926 + +0.2 4,549,927 - -0.9 4,549,927 - +0.1 4,549,931 - +0.6 4,549,948 - -0.3 4,549,956 + -1.5 4,549,957 - +1.0 4,549,957 - +1.3 4,549,957 - +0.2 4,549,957 - +1.2 4,549,959 + +0.7 4,549,959 + -0.9 4,550,035 + -2.1 4,550,036 - -0.9 4,550,040 + +0.4 4,550,041 - -0.4 4,550,045 + +0.4 4,550,110 + +1.6 4,550,110 + -0.2 4,550,110 + -0.6 4,550,110 + +0.3 4,550,110 + -0.1 4,550,110 + -0.4 4,550,110 + +0.9 4,550,110 + -1.4 4,550,111 - -0.2 4,550,111 - +0.4 4,550,111 - +1.5 4,550,113 + +0.8 4,550,113 + -1.1 4,550,191 + ECD_04269 0.24 +0.5 4,550,191 + ECD_04269 0.24 +0.4 4,550,220 + ECD_04269 0.32 -2.3 4,550,229 + ECD_04269 0.35 -0.7 4,550,230 - ECD_04269 0.35 -0.8 4,550,538 + +0.4 4,550,540 + -0.2 4,550,540 + +0.5 4,550,540 + +1.4 4,550,541 - -0.5 4,550,666 - ECD_04270 0.27 -0.1 4,550,666 - ECD_04270 0.27 +0.1 4,550,741 - ECD_04270 0.41 +0.4 4,550,953 + ECD_04270 0.82 -0.3
Or see this region's nucleotide sequence