Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04264 and ECD_04265 are separated by 48 nucleotides ECD_04265 and ECD_04266 are separated by 20 nucleotides
ECD_04264: ECD_04264 - 3-phosphoserine phosphatase, at 4,542,250 to 4,543,218
_04264
ECD_04265: ECD_04265 - DNA repair protein, at 4,543,267 to 4,544,649
_04265
ECD_04266: ECD_04266 - trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor, at 4,544,670 to 4,545,902
_04266
Position (kb)
4543
4544
4545 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4542.293 kb on + strand at 4542.317 kb on + strand at 4542.412 kb on + strand, within ECD_04264 at 4542.627 kb on + strand, within ECD_04264 at 4542.627 kb on + strand, within ECD_04264 at 4542.627 kb on + strand, within ECD_04264 at 4542.711 kb on + strand, within ECD_04264 at 4542.870 kb on + strand, within ECD_04264 at 4542.871 kb on - strand, within ECD_04264 at 4542.886 kb on + strand, within ECD_04264 at 4542.887 kb on - strand, within ECD_04264 at 4542.991 kb on + strand, within ECD_04264 at 4542.991 kb on + strand, within ECD_04264 at 4543.216 kb on + strand at 4543.526 kb on + strand, within ECD_04265 at 4543.526 kb on + strand, within ECD_04265 at 4543.527 kb on - strand, within ECD_04265 at 4543.646 kb on - strand, within ECD_04265 at 4543.646 kb on - strand, within ECD_04265 at 4543.722 kb on + strand, within ECD_04265 at 4543.722 kb on + strand, within ECD_04265 at 4543.722 kb on + strand, within ECD_04265 at 4543.722 kb on + strand, within ECD_04265 at 4543.722 kb on + strand, within ECD_04265 at 4543.723 kb on - strand, within ECD_04265 at 4543.723 kb on - strand, within ECD_04265 at 4543.790 kb on + strand, within ECD_04265 at 4543.790 kb on + strand, within ECD_04265 at 4543.826 kb on + strand, within ECD_04265 at 4543.826 kb on + strand, within ECD_04265 at 4543.827 kb on - strand, within ECD_04265 at 4543.827 kb on - strand, within ECD_04265 at 4543.827 kb on - strand, within ECD_04265 at 4543.873 kb on + strand, within ECD_04265 at 4543.974 kb on + strand, within ECD_04265 at 4543.975 kb on - strand, within ECD_04265 at 4544.391 kb on - strand, within ECD_04265 at 4544.645 kb on + strand at 4544.645 kb on + strand at 4544.645 kb on + strand at 4544.645 kb on + strand at 4544.646 kb on - strand at 4544.647 kb on + strand at 4544.647 kb on + strand at 4544.647 kb on + strand at 4544.648 kb on - strand at 4544.669 kb on + strand at 4544.669 kb on + strand at 4544.669 kb on + strand at 4544.669 kb on + strand at 4544.723 kb on - strand at 4544.723 kb on - strand at 4544.747 kb on + strand at 4544.747 kb on + strand at 4544.764 kb on + strand at 4544.876 kb on - strand, within ECD_04266 at 4544.909 kb on + strand, within ECD_04266 at 4544.909 kb on + strand, within ECD_04266 at 4544.909 kb on + strand, within ECD_04266 at 4544.909 kb on + strand, within ECD_04266 at 4544.909 kb on + strand, within ECD_04266 at 4544.910 kb on - strand, within ECD_04266 at 4544.910 kb on - strand, within ECD_04266 at 4544.910 kb on - strand, within ECD_04266 at 4544.910 kb on - strand, within ECD_04266 at 4544.910 kb on - strand, within ECD_04266 at 4544.910 kb on - strand, within ECD_04266 at 4544.913 kb on + strand, within ECD_04266 at 4544.913 kb on + strand, within ECD_04266 at 4544.913 kb on + strand, within ECD_04266 at 4544.913 kb on + strand, within ECD_04266 at 4544.913 kb on + strand, within ECD_04266 at 4544.914 kb on - strand, within ECD_04266 at 4544.914 kb on - strand, within ECD_04266 at 4545.066 kb on + strand, within ECD_04266 at 4545.195 kb on + strand, within ECD_04266 at 4545.225 kb on + strand, within ECD_04266 at 4545.225 kb on + strand, within ECD_04266 at 4545.225 kb on + strand, within ECD_04266 at 4545.225 kb on + strand, within ECD_04266 at 4545.226 kb on - strand, within ECD_04266 at 4545.226 kb on - strand, within ECD_04266 at 4545.227 kb on + strand, within ECD_04266 at 4545.228 kb on - strand, within ECD_04266 at 4545.228 kb on - strand, within ECD_04266 at 4545.273 kb on - strand, within ECD_04266 at 4545.330 kb on + strand, within ECD_04266 at 4545.330 kb on + strand, within ECD_04266 at 4545.330 kb on + strand, within ECD_04266 at 4545.331 kb on - strand, within ECD_04266 at 4545.332 kb on + strand, within ECD_04266 at 4545.332 kb on + strand, within ECD_04266 at 4545.333 kb on - strand, within ECD_04266 at 4545.333 kb on - strand, within ECD_04266 at 4545.333 kb on - strand, within ECD_04266 at 4545.361 kb on + strand, within ECD_04266 at 4545.361 kb on + strand, within ECD_04266 at 4545.429 kb on - strand, within ECD_04266 at 4545.468 kb on + strand, within ECD_04266 at 4545.633 kb on + strand, within ECD_04266
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,542,293 + +0.4 4,542,317 + +0.6 4,542,412 + ECD_04264 0.17 +1.8 4,542,627 + ECD_04264 0.39 +1.2 4,542,627 + ECD_04264 0.39 +1.4 4,542,627 + ECD_04264 0.39 +0.5 4,542,711 + ECD_04264 0.48 +0.8 4,542,870 + ECD_04264 0.64 -0.4 4,542,871 - ECD_04264 0.64 -0.4 4,542,886 + ECD_04264 0.66 +2.0 4,542,887 - ECD_04264 0.66 -1.0 4,542,991 + ECD_04264 0.76 +0.9 4,542,991 + ECD_04264 0.76 +0.9 4,543,216 + -2.0 4,543,526 + ECD_04265 0.19 -0.9 4,543,526 + ECD_04265 0.19 +0.9 4,543,527 - ECD_04265 0.19 -0.8 4,543,646 - ECD_04265 0.27 -2.1 4,543,646 - ECD_04265 0.27 -1.3 4,543,722 + ECD_04265 0.33 -0.5 4,543,722 + ECD_04265 0.33 -0.6 4,543,722 + ECD_04265 0.33 -0.7 4,543,722 + ECD_04265 0.33 +1.3 4,543,722 + ECD_04265 0.33 -0.7 4,543,723 - ECD_04265 0.33 -0.9 4,543,723 - ECD_04265 0.33 -1.6 4,543,790 + ECD_04265 0.38 +0.0 4,543,790 + ECD_04265 0.38 +1.1 4,543,826 + ECD_04265 0.40 -0.1 4,543,826 + ECD_04265 0.40 -0.9 4,543,827 - ECD_04265 0.40 -0.2 4,543,827 - ECD_04265 0.40 -2.8 4,543,827 - ECD_04265 0.40 -1.5 4,543,873 + ECD_04265 0.44 -0.2 4,543,974 + ECD_04265 0.51 -0.5 4,543,975 - ECD_04265 0.51 -2.4 4,544,391 - ECD_04265 0.81 -2.7 4,544,645 + +0.2 4,544,645 + -0.3 4,544,645 + +0.3 4,544,645 + -0.3 4,544,646 - -2.2 4,544,647 + -0.8 4,544,647 + +1.1 4,544,647 + +0.6 4,544,648 - -0.8 4,544,669 + -2.5 4,544,669 + -1.3 4,544,669 + -1.4 4,544,669 + -1.1 4,544,723 - -2.6 4,544,723 - -1.3 4,544,747 + -2.9 4,544,747 + -0.7 4,544,764 + -0.2 4,544,876 - ECD_04266 0.17 -0.1 4,544,909 + ECD_04266 0.19 -1.0 4,544,909 + ECD_04266 0.19 -1.0 4,544,909 + ECD_04266 0.19 -0.4 4,544,909 + ECD_04266 0.19 +0.0 4,544,909 + ECD_04266 0.19 -0.1 4,544,910 - ECD_04266 0.19 +0.5 4,544,910 - ECD_04266 0.19 -0.5 4,544,910 - ECD_04266 0.19 -0.8 4,544,910 - ECD_04266 0.19 -1.4 4,544,910 - ECD_04266 0.19 -1.0 4,544,910 - ECD_04266 0.19 -2.6 4,544,913 + ECD_04266 0.20 -0.5 4,544,913 + ECD_04266 0.20 -1.8 4,544,913 + ECD_04266 0.20 -0.4 4,544,913 + ECD_04266 0.20 -0.8 4,544,913 + ECD_04266 0.20 -3.0 4,544,914 - ECD_04266 0.20 -2.2 4,544,914 - ECD_04266 0.20 -0.6 4,545,066 + ECD_04266 0.32 +1.0 4,545,195 + ECD_04266 0.43 -0.9 4,545,225 + ECD_04266 0.45 -1.9 4,545,225 + ECD_04266 0.45 -0.4 4,545,225 + ECD_04266 0.45 +0.1 4,545,225 + ECD_04266 0.45 -1.5 4,545,226 - ECD_04266 0.45 -1.3 4,545,226 - ECD_04266 0.45 -0.9 4,545,227 + ECD_04266 0.45 -2.3 4,545,228 - ECD_04266 0.45 -1.8 4,545,228 - ECD_04266 0.45 -2.3 4,545,273 - ECD_04266 0.49 -0.3 4,545,330 + ECD_04266 0.54 -0.8 4,545,330 + ECD_04266 0.54 -0.6 4,545,330 + ECD_04266 0.54 -1.1 4,545,331 - ECD_04266 0.54 -1.7 4,545,332 + ECD_04266 0.54 +0.0 4,545,332 + ECD_04266 0.54 +0.4 4,545,333 - ECD_04266 0.54 -0.2 4,545,333 - ECD_04266 0.54 -1.1 4,545,333 - ECD_04266 0.54 +0.0 4,545,361 + ECD_04266 0.56 -1.4 4,545,361 + ECD_04266 0.56 -1.7 4,545,429 - ECD_04266 0.62 -1.3 4,545,468 + ECD_04266 0.65 -1.6 4,545,633 + ECD_04266 0.78 -0.6
Or see this region's nucleotide sequence