Strain Fitness in Escherichia coli BL21 around ECD_04257

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04256 and ECD_04257 are separated by 257 nucleotidesECD_04257 and ECD_04258 are separated by 126 nucleotides ECD_04256: ECD_04256 - DUF3029 family protein, putative glycine radical enzyme, at 4,533,890 to 4,535,440 _04256 ECD_04257: ECD_04257 - 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked, at 4,535,698 to 4,536,477 _04257 ECD_04258: ECD_04258 - thymidine phosphorylase, at 4,536,604 to 4,537,926 _04258 Position (kb) 4535 4536 4537Strain fitness (log2 ratio) -3 -2 -1 0 1at 4534.731 kb on + strand, within ECD_04256at 4534.969 kb on + strand, within ECD_04256at 4535.015 kb on + strand, within ECD_04256at 4535.114 kb on + strand, within ECD_04256at 4535.115 kb on - strand, within ECD_04256at 4535.215 kb on - strand, within ECD_04256at 4535.264 kb on - strand, within ECD_04256at 4535.478 kb on + strandat 4535.479 kb on - strandat 4535.479 kb on - strandat 4535.569 kb on + strandat 4535.570 kb on - strandat 4535.588 kb on - strandat 4535.591 kb on + strandat 4535.613 kb on - strandat 4535.783 kb on + strand, within ECD_04257at 4535.784 kb on - strand, within ECD_04257at 4535.833 kb on - strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.838 kb on + strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.839 kb on - strand, within ECD_04257at 4535.843 kb on - strand, within ECD_04257at 4535.910 kb on + strand, within ECD_04257at 4536.072 kb on + strand, within ECD_04257at 4536.098 kb on + strand, within ECD_04257at 4536.099 kb on - strand, within ECD_04257at 4536.456 kb on + strandat 4536.457 kb on - strandat 4536.472 kb on + strandat 4536.473 kb on - strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.475 kb on + strandat 4536.476 kb on - strandat 4536.476 kb on - strandat 4536.476 kb on - strandat 4536.479 kb on + strandat 4536.479 kb on + strandat 4536.480 kb on - strandat 4536.527 kb on + strandat 4536.527 kb on + strandat 4536.527 kb on + strandat 4536.853 kb on - strand, within ECD_04258at 4536.853 kb on - strand, within ECD_04258at 4536.925 kb on + strand, within ECD_04258at 4536.925 kb on + strand, within ECD_04258at 4536.928 kb on - strand, within ECD_04258at 4536.961 kb on - strand, within ECD_04258at 4537.042 kb on - strand, within ECD_04258at 4537.120 kb on - strand, within ECD_04258at 4537.234 kb on - strand, within ECD_04258at 4537.244 kb on - strand, within ECD_04258at 4537.244 kb on - strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.455 kb on + strand, within ECD_04258at 4537.456 kb on - strand, within ECD_04258at 4537.456 kb on - strand, within ECD_04258

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,534,731 + ECD_04256 0.54 +0.1
4,534,969 + ECD_04256 0.70 +0.3
4,535,015 + ECD_04256 0.73 +1.1
4,535,114 + ECD_04256 0.79 +0.6
4,535,115 - ECD_04256 0.79 -1.0
4,535,215 - ECD_04256 0.85 -1.5
4,535,264 - ECD_04256 0.89 +0.2
4,535,478 + -0.2
4,535,479 - -0.5
4,535,479 - -0.4
4,535,569 + -0.5
4,535,570 - -2.0
4,535,588 - -3.4
4,535,591 + -0.3
4,535,613 - -0.6
4,535,783 + ECD_04257 0.11 -0.9
4,535,784 - ECD_04257 0.11 +1.1
4,535,833 - ECD_04257 0.17 +1.3
4,535,838 + ECD_04257 0.18 -1.0
4,535,838 + ECD_04257 0.18 +0.5
4,535,838 + ECD_04257 0.18 -0.4
4,535,838 + ECD_04257 0.18 +0.2
4,535,838 + ECD_04257 0.18 +0.6
4,535,839 - ECD_04257 0.18 +0.6
4,535,839 - ECD_04257 0.18 +0.0
4,535,839 - ECD_04257 0.18 +0.8
4,535,843 - ECD_04257 0.19 +0.4
4,535,910 + ECD_04257 0.27 +0.6
4,536,072 + ECD_04257 0.48 +0.4
4,536,098 + ECD_04257 0.51 +0.3
4,536,099 - ECD_04257 0.51 +0.9
4,536,456 + +0.0
4,536,457 - +0.9
4,536,472 + +0.4
4,536,473 - -1.5
4,536,475 + -1.2
4,536,475 + +0.7
4,536,475 + -0.4
4,536,475 + -1.2
4,536,475 + -0.1
4,536,476 - -0.4
4,536,476 - -0.4
4,536,476 - -0.2
4,536,479 + -0.5
4,536,479 + +0.2
4,536,480 - +0.0
4,536,527 + +0.0
4,536,527 + +0.8
4,536,527 + -0.3
4,536,853 - ECD_04258 0.19 +0.6
4,536,853 - ECD_04258 0.19 +0.7
4,536,925 + ECD_04258 0.24 +0.1
4,536,925 + ECD_04258 0.24 +1.0
4,536,928 - ECD_04258 0.24 -0.4
4,536,961 - ECD_04258 0.27 +0.1
4,537,042 - ECD_04258 0.33 +1.5
4,537,120 - ECD_04258 0.39 +0.5
4,537,234 - ECD_04258 0.48 +1.1
4,537,244 - ECD_04258 0.48 +1.6
4,537,244 - ECD_04258 0.48 -0.2
4,537,455 + ECD_04258 0.64 -0.3
4,537,455 + ECD_04258 0.64 -1.5
4,537,455 + ECD_04258 0.64 -0.3
4,537,456 - ECD_04258 0.64 -0.4
4,537,456 - ECD_04258 0.64 -1.9

Or see this region's nucleotide sequence