Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04211 and ECD_04212 overlap by 1 nucleotides ECD_04212 and ECD_04213 are separated by 161 nucleotides
ECD_04211: ECD_04211 - 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC, at 4,483,222 to 4,484,268
_04211
ECD_04212: ECD_04212 - 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB, at 4,484,268 to 4,485,647
_04212
ECD_04213: ECD_04213 - toxic peptide regulated by antisense sRNA symR, at 4,485,809 to 4,486,150
_04213
Position (kb)
4484
4485
4486 Strain fitness (log2 ratio)
-1
0
1 at 4483.285 kb on + strand at 4483.351 kb on + strand, within ECD_04211 at 4483.362 kb on - strand, within ECD_04211 at 4484.251 kb on + strand at 4484.299 kb on - strand at 4484.669 kb on - strand, within ECD_04212 at 4484.942 kb on - strand, within ECD_04212 at 4485.734 kb on + strand at 4485.761 kb on + strand at 4485.952 kb on + strand, within ECD_04213 at 4485.953 kb on - strand, within ECD_04213 at 4486.051 kb on - strand, within ECD_04213 at 4486.071 kb on + strand, within ECD_04213 at 4486.154 kb on + strand at 4486.154 kb on + strand at 4486.564 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,483,285 + +0.9 4,483,351 + ECD_04211 0.12 -0.2 4,483,362 - ECD_04211 0.13 +0.4 4,484,251 + +0.1 4,484,299 - +0.2 4,484,669 - ECD_04212 0.29 +0.8 4,484,942 - ECD_04212 0.49 +1.1 4,485,734 + -0.1 4,485,761 + +0.3 4,485,952 + ECD_04213 0.42 -0.1 4,485,953 - ECD_04213 0.42 -1.2 4,486,051 - ECD_04213 0.71 -1.3 4,486,071 + ECD_04213 0.77 -1.3 4,486,154 + +0.6 4,486,154 + -0.4 4,486,564 + +0.6
Or see this region's nucleotide sequence