Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04153 and ECD_04154 are separated by 0 nucleotides ECD_04154 and ECD_04155 overlap by 4 nucleotides ECD_04155 and ECD_04156 overlap by 4 nucleotides
ECD_04153: ECD_04153 - ferric citrate ABC transporter ATPase, at 4,424,087 to 4,424,854
_04153
ECD_04154: ECD_04154 - ferric citrate ABC transporter permease, at 4,424,855 to 4,425,811
_04154
ECD_04155: ECD_04155 - ferric citrate ABC transporter permease, at 4,425,808 to 4,426,806
_04155
ECD_04156: ECD_04156 - ferric citrate ABC transporter periplasmic binding protein, at 4,426,803 to 4,427,705
_04156
Position (kb)
4424
4425
4426 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4423.978 kb on + strand at 4424.088 kb on + strand at 4424.133 kb on - strand at 4424.206 kb on + strand, within ECD_04153 at 4424.260 kb on + strand, within ECD_04153 at 4424.344 kb on + strand, within ECD_04153 at 4424.352 kb on + strand, within ECD_04153 at 4424.353 kb on - strand, within ECD_04153 at 4424.373 kb on - strand, within ECD_04153 at 4424.375 kb on + strand, within ECD_04153 at 4424.497 kb on + strand, within ECD_04153 at 4424.560 kb on - strand, within ECD_04153 at 4424.598 kb on - strand, within ECD_04153 at 4424.598 kb on - strand, within ECD_04153 at 4424.653 kb on + strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.654 kb on - strand, within ECD_04153 at 4424.678 kb on + strand, within ECD_04153 at 4424.721 kb on - strand, within ECD_04153 at 4424.746 kb on + strand, within ECD_04153 at 4424.800 kb on + strand at 4424.801 kb on - strand at 4424.801 kb on - strand at 4424.801 kb on - strand at 4424.805 kb on - strand at 4424.805 kb on - strand at 4424.805 kb on - strand at 4424.944 kb on + strand at 4424.944 kb on + strand at 4424.944 kb on + strand at 4424.945 kb on - strand at 4424.945 kb on - strand at 4425.046 kb on + strand, within ECD_04154 at 4425.047 kb on - strand, within ECD_04154 at 4425.101 kb on - strand, within ECD_04154 at 4425.120 kb on - strand, within ECD_04154 at 4425.120 kb on - strand, within ECD_04154 at 4425.123 kb on - strand, within ECD_04154 at 4425.288 kb on - strand, within ECD_04154 at 4425.440 kb on + strand, within ECD_04154 at 4425.505 kb on + strand, within ECD_04154 at 4425.512 kb on + strand, within ECD_04154 at 4425.512 kb on + strand, within ECD_04154 at 4425.513 kb on - strand, within ECD_04154 at 4425.674 kb on + strand, within ECD_04154 at 4425.674 kb on + strand, within ECD_04154 at 4425.675 kb on - strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.678 kb on + strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.679 kb on - strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.681 kb on + strand, within ECD_04154 at 4425.682 kb on - strand, within ECD_04154 at 4425.755 kb on + strand at 4425.793 kb on + strand at 4425.910 kb on + strand, within ECD_04155 at 4425.911 kb on - strand, within ECD_04155 at 4425.962 kb on - strand, within ECD_04155 at 4426.073 kb on - strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.077 kb on + strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.078 kb on - strand, within ECD_04155 at 4426.093 kb on + strand, within ECD_04155 at 4426.120 kb on - strand, within ECD_04155 at 4426.271 kb on + strand, within ECD_04155 at 4426.318 kb on - strand, within ECD_04155 at 4426.318 kb on - strand, within ECD_04155 at 4426.451 kb on + strand, within ECD_04155 at 4426.485 kb on + strand, within ECD_04155 at 4426.515 kb on + strand, within ECD_04155 at 4426.752 kb on + strand at 4426.752 kb on + strand at 4426.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,423,978 + +0.5 4,424,088 + +0.3 4,424,133 - +0.2 4,424,206 + ECD_04153 0.15 -0.1 4,424,260 + ECD_04153 0.23 -1.7 4,424,344 + ECD_04153 0.33 -0.8 4,424,352 + ECD_04153 0.35 +0.7 4,424,353 - ECD_04153 0.35 +1.8 4,424,373 - ECD_04153 0.37 +0.6 4,424,375 + ECD_04153 0.38 +0.1 4,424,497 + ECD_04153 0.53 +0.4 4,424,560 - ECD_04153 0.62 +0.0 4,424,598 - ECD_04153 0.67 -0.2 4,424,598 - ECD_04153 0.67 -0.9 4,424,653 + ECD_04153 0.74 +0.3 4,424,654 - ECD_04153 0.74 -0.6 4,424,654 - ECD_04153 0.74 +1.1 4,424,654 - ECD_04153 0.74 +0.0 4,424,654 - ECD_04153 0.74 -0.6 4,424,678 + ECD_04153 0.77 +0.1 4,424,721 - ECD_04153 0.83 +0.3 4,424,746 + ECD_04153 0.86 +0.5 4,424,800 + +0.2 4,424,801 - -1.0 4,424,801 - -0.2 4,424,801 - +0.2 4,424,805 - +0.2 4,424,805 - +0.8 4,424,805 - +0.4 4,424,944 + +1.4 4,424,944 + -1.0 4,424,944 + -1.3 4,424,945 - -1.4 4,424,945 - +0.3 4,425,046 + ECD_04154 0.20 -1.0 4,425,047 - ECD_04154 0.20 +0.2 4,425,101 - ECD_04154 0.26 -1.1 4,425,120 - ECD_04154 0.28 -0.2 4,425,120 - ECD_04154 0.28 +0.1 4,425,123 - ECD_04154 0.28 -0.9 4,425,288 - ECD_04154 0.45 -0.5 4,425,440 + ECD_04154 0.61 -0.4 4,425,505 + ECD_04154 0.68 -0.2 4,425,512 + ECD_04154 0.69 +0.4 4,425,512 + ECD_04154 0.69 -1.0 4,425,513 - ECD_04154 0.69 -1.2 4,425,674 + ECD_04154 0.86 +0.1 4,425,674 + ECD_04154 0.86 -0.0 4,425,675 - ECD_04154 0.86 +1.0 4,425,678 + ECD_04154 0.86 -0.7 4,425,678 + ECD_04154 0.86 -2.1 4,425,678 + ECD_04154 0.86 -0.1 4,425,678 + ECD_04154 0.86 +0.7 4,425,678 + ECD_04154 0.86 -1.3 4,425,678 + ECD_04154 0.86 -0.1 4,425,678 + ECD_04154 0.86 -0.9 4,425,679 - ECD_04154 0.86 +1.2 4,425,679 - ECD_04154 0.86 -1.0 4,425,679 - ECD_04154 0.86 -2.9 4,425,681 + ECD_04154 0.86 -0.3 4,425,681 + ECD_04154 0.86 +1.1 4,425,681 + ECD_04154 0.86 -1.0 4,425,682 - ECD_04154 0.86 +0.6 4,425,755 + +2.2 4,425,793 + +1.3 4,425,910 + ECD_04155 0.10 -1.1 4,425,911 - ECD_04155 0.10 -1.1 4,425,962 - ECD_04155 0.15 -0.1 4,426,073 - ECD_04155 0.27 +0.6 4,426,077 + ECD_04155 0.27 +0.0 4,426,077 + ECD_04155 0.27 -0.5 4,426,077 + ECD_04155 0.27 +0.2 4,426,077 + ECD_04155 0.27 -0.4 4,426,077 + ECD_04155 0.27 +1.6 4,426,078 - ECD_04155 0.27 -1.9 4,426,078 - ECD_04155 0.27 -0.5 4,426,078 - ECD_04155 0.27 -0.5 4,426,078 - ECD_04155 0.27 +0.4 4,426,078 - ECD_04155 0.27 +0.6 4,426,093 + ECD_04155 0.29 -0.7 4,426,120 - ECD_04155 0.31 +0.3 4,426,271 + ECD_04155 0.46 -0.3 4,426,318 - ECD_04155 0.51 -0.2 4,426,318 - ECD_04155 0.51 -2.1 4,426,451 + ECD_04155 0.64 -0.9 4,426,485 + ECD_04155 0.68 +0.3 4,426,515 + ECD_04155 0.71 -0.4 4,426,752 + +0.5 4,426,752 + -0.2 4,426,752 + +0.2
Or see this region's nucleotide sequence