Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04082 and ECD_04083 are separated by 108 nucleotides ECD_04083 and ECD_04084 are separated by 88 nucleotides ECD_04084 and ECD_04085 are separated by 122 nucleotides
ECD_04082: ECD_04082 - DMT transporter family inner membrane protein, at 4,345,455 to 4,346,420
_04082
ECD_04083: ECD_04083 - NAD(P)H:quinone oxidoreductase, at 4,346,529 to 4,347,389
_04083
ECD_04084: ECD_04084 - DUF24 family HxlR-type putative transcriptional regulator, at 4,347,478 to 4,347,858
_04084
ECD_04085: ECD_04085 - 2':3'-cyclic-nucleotide 2'-phosphodiesterase, at 4,347,981 to 4,349,924
_04085
Position (kb)
4346
4347
4348 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4345.718 kb on + strand, within ECD_04082 at 4345.719 kb on - strand, within ECD_04082 at 4345.721 kb on + strand, within ECD_04082 at 4345.771 kb on - strand, within ECD_04082 at 4345.783 kb on + strand, within ECD_04082 at 4345.903 kb on + strand, within ECD_04082 at 4345.935 kb on + strand, within ECD_04082 at 4345.952 kb on + strand, within ECD_04082 at 4345.953 kb on - strand, within ECD_04082 at 4345.953 kb on - strand, within ECD_04082 at 4346.083 kb on + strand, within ECD_04082 at 4346.129 kb on + strand, within ECD_04082 at 4346.129 kb on + strand, within ECD_04082 at 4346.130 kb on - strand, within ECD_04082 at 4346.138 kb on + strand, within ECD_04082 at 4346.207 kb on + strand, within ECD_04082 at 4346.208 kb on - strand, within ECD_04082 at 4346.309 kb on - strand, within ECD_04082 at 4346.338 kb on + strand at 4346.392 kb on - strand at 4346.402 kb on - strand at 4346.402 kb on - strand at 4346.527 kb on - strand at 4346.531 kb on - strand at 4346.663 kb on + strand, within ECD_04083 at 4346.738 kb on + strand, within ECD_04083 at 4346.739 kb on - strand, within ECD_04083 at 4346.739 kb on - strand, within ECD_04083 at 4346.923 kb on - strand, within ECD_04083 at 4346.971 kb on + strand, within ECD_04083 at 4346.971 kb on + strand, within ECD_04083 at 4346.996 kb on - strand, within ECD_04083 at 4347.086 kb on + strand, within ECD_04083 at 4347.088 kb on + strand, within ECD_04083 at 4347.128 kb on + strand, within ECD_04083 at 4347.134 kb on + strand, within ECD_04083 at 4347.134 kb on + strand, within ECD_04083 at 4347.233 kb on - strand, within ECD_04083 at 4347.300 kb on - strand, within ECD_04083 at 4347.306 kb on + strand at 4347.307 kb on - strand at 4347.341 kb on + strand at 4347.341 kb on + strand at 4347.342 kb on - strand at 4347.349 kb on + strand at 4347.349 kb on + strand at 4347.349 kb on + strand at 4347.350 kb on - strand at 4347.350 kb on - strand at 4347.350 kb on - strand at 4347.350 kb on - strand at 4347.350 kb on - strand at 4347.419 kb on + strand at 4347.423 kb on + strand at 4347.424 kb on - strand at 4347.468 kb on + strand at 4347.609 kb on + strand, within ECD_04084 at 4347.610 kb on - strand, within ECD_04084 at 4347.686 kb on + strand, within ECD_04084 at 4347.745 kb on + strand, within ECD_04084 at 4347.856 kb on + strand at 4347.898 kb on + strand at 4347.960 kb on - strand at 4347.980 kb on - strand at 4347.980 kb on - strand at 4347.982 kb on + strand at 4347.982 kb on + strand at 4347.983 kb on - strand at 4348.003 kb on + strand at 4348.049 kb on - strand at 4348.082 kb on + strand at 4348.155 kb on - strand at 4348.294 kb on + strand, within ECD_04085 at 4348.294 kb on + strand, within ECD_04085 at 4348.298 kb on + strand, within ECD_04085 at 4348.361 kb on + strand, within ECD_04085
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,345,718 + ECD_04082 0.27 -0.2 4,345,719 - ECD_04082 0.27 +0.3 4,345,721 + ECD_04082 0.28 +0.3 4,345,771 - ECD_04082 0.33 -0.7 4,345,783 + ECD_04082 0.34 +1.2 4,345,903 + ECD_04082 0.46 -0.8 4,345,935 + ECD_04082 0.50 -0.8 4,345,952 + ECD_04082 0.51 +0.8 4,345,953 - ECD_04082 0.52 -0.3 4,345,953 - ECD_04082 0.52 -0.0 4,346,083 + ECD_04082 0.65 -1.4 4,346,129 + ECD_04082 0.70 +1.8 4,346,129 + ECD_04082 0.70 +0.9 4,346,130 - ECD_04082 0.70 +1.0 4,346,138 + ECD_04082 0.71 +0.6 4,346,207 + ECD_04082 0.78 +0.7 4,346,208 - ECD_04082 0.78 +0.1 4,346,309 - ECD_04082 0.88 -0.0 4,346,338 + -0.1 4,346,392 - -0.1 4,346,402 - -1.1 4,346,402 - +0.8 4,346,527 - +0.7 4,346,531 - +0.0 4,346,663 + ECD_04083 0.16 -1.0 4,346,738 + ECD_04083 0.24 +0.1 4,346,739 - ECD_04083 0.24 +0.0 4,346,739 - ECD_04083 0.24 -0.2 4,346,923 - ECD_04083 0.46 +0.1 4,346,971 + ECD_04083 0.51 -0.2 4,346,971 + ECD_04083 0.51 +0.2 4,346,996 - ECD_04083 0.54 +0.1 4,347,086 + ECD_04083 0.65 +0.7 4,347,088 + ECD_04083 0.65 -2.4 4,347,128 + ECD_04083 0.70 +0.0 4,347,134 + ECD_04083 0.70 -2.0 4,347,134 + ECD_04083 0.70 -2.4 4,347,233 - ECD_04083 0.82 -0.7 4,347,300 - ECD_04083 0.90 +0.8 4,347,306 + -0.2 4,347,307 - -0.1 4,347,341 + -0.4 4,347,341 + -0.2 4,347,342 - +0.6 4,347,349 + -0.6 4,347,349 + +0.6 4,347,349 + -1.4 4,347,350 - +0.4 4,347,350 - -0.0 4,347,350 - -0.2 4,347,350 - +0.4 4,347,350 - +0.4 4,347,419 + -0.9 4,347,423 + -1.2 4,347,424 - -1.6 4,347,468 + +0.4 4,347,609 + ECD_04084 0.34 -1.9 4,347,610 - ECD_04084 0.35 +1.5 4,347,686 + ECD_04084 0.55 -0.2 4,347,745 + ECD_04084 0.70 -0.1 4,347,856 + -0.0 4,347,898 + -0.2 4,347,960 - -0.4 4,347,980 - -0.5 4,347,980 - +2.4 4,347,982 + +0.5 4,347,982 + +0.8 4,347,983 - +0.9 4,348,003 + +1.8 4,348,049 - +0.9 4,348,082 + -0.3 4,348,155 - +1.2 4,348,294 + ECD_04085 0.16 +0.9 4,348,294 + ECD_04085 0.16 -1.0 4,348,298 + ECD_04085 0.16 -0.7 4,348,361 + ECD_04085 0.20 +0.4
Or see this region's nucleotide sequence