Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04062 and ECD_04063 are separated by 13 nucleotides ECD_04063 and ECD_04064 are separated by 9 nucleotides ECD_04064 and ECD_04065 overlap by 1 nucleotides ECD_04065 and ECD_04066 are separated by 128 nucleotides
ECD_04062: ECD_04062 - L-ascorbate-specific enzyme IIA component of PTS, at 4,328,228 to 4,328,692
_04062
ECD_04063: ECD_04063 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 4,328,706 to 4,329,356
_04063
ECD_04064: ECD_04064 - L-xylulose 5-phosphate 3-epimerase, at 4,329,366 to 4,330,220
_04064
ECD_04065: ECD_04065 - L-ribulose 5-phosphate 4-epimerase, at 4,330,220 to 4,330,906
_04065
ECD_04066: ECD_04066 - YhcN family protein, periplasmic, at 4,331,035 to 4,331,310
_04066
Position (kb)
4329
4330
4331 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4328.396 kb on + strand, within ECD_04062 at 4328.453 kb on - strand, within ECD_04062 at 4328.655 kb on + strand at 4328.655 kb on + strand at 4328.690 kb on + strand at 4328.691 kb on - strand at 4328.691 kb on - strand at 4328.723 kb on - strand at 4328.723 kb on - strand at 4328.927 kb on + strand, within ECD_04063 at 4328.928 kb on - strand, within ECD_04063 at 4328.928 kb on - strand, within ECD_04063 at 4328.962 kb on + strand, within ECD_04063 at 4329.007 kb on + strand, within ECD_04063 at 4329.007 kb on + strand, within ECD_04063 at 4329.164 kb on + strand, within ECD_04063 at 4329.252 kb on - strand, within ECD_04063 at 4329.365 kb on + strand at 4329.396 kb on + strand at 4329.485 kb on - strand, within ECD_04064 at 4329.659 kb on + strand, within ECD_04064 at 4329.660 kb on - strand, within ECD_04064 at 4329.729 kb on + strand, within ECD_04064 at 4329.729 kb on + strand, within ECD_04064 at 4329.732 kb on + strand, within ECD_04064 at 4329.732 kb on + strand, within ECD_04064 at 4329.840 kb on + strand, within ECD_04064 at 4329.886 kb on - strand, within ECD_04064 at 4329.983 kb on + strand, within ECD_04064 at 4329.994 kb on + strand, within ECD_04064 at 4329.994 kb on + strand, within ECD_04064 at 4329.994 kb on + strand, within ECD_04064 at 4329.994 kb on + strand, within ECD_04064 at 4329.995 kb on - strand, within ECD_04064 at 4329.995 kb on - strand, within ECD_04064 at 4329.995 kb on - strand, within ECD_04064 at 4330.095 kb on + strand, within ECD_04064 at 4330.242 kb on + strand at 4330.242 kb on + strand at 4330.243 kb on - strand at 4330.288 kb on + strand at 4330.397 kb on - strand, within ECD_04065 at 4330.397 kb on - strand, within ECD_04065 at 4330.575 kb on - strand, within ECD_04065 at 4330.694 kb on - strand, within ECD_04065 at 4330.694 kb on - strand, within ECD_04065 at 4330.694 kb on - strand, within ECD_04065 at 4330.712 kb on + strand, within ECD_04065 at 4330.813 kb on + strand, within ECD_04065 at 4330.813 kb on + strand, within ECD_04065 at 4330.814 kb on - strand, within ECD_04065 at 4330.816 kb on + strand, within ECD_04065 at 4330.817 kb on - strand, within ECD_04065 at 4330.889 kb on + strand at 4330.893 kb on - strand at 4330.905 kb on - strand at 4330.905 kb on - strand at 4330.942 kb on - strand at 4330.942 kb on - strand at 4331.004 kb on + strand at 4331.005 kb on - strand at 4331.026 kb on + strand at 4331.026 kb on + strand at 4331.027 kb on - strand at 4331.064 kb on + strand, within ECD_04066 at 4331.073 kb on + strand, within ECD_04066 at 4331.106 kb on - strand, within ECD_04066 at 4331.106 kb on - strand, within ECD_04066 at 4331.109 kb on - strand, within ECD_04066 at 4331.109 kb on - strand, within ECD_04066 at 4331.109 kb on - strand, within ECD_04066 at 4331.140 kb on + strand, within ECD_04066 at 4331.140 kb on + strand, within ECD_04066 at 4331.141 kb on - strand, within ECD_04066 at 4331.176 kb on - strand, within ECD_04066 at 4331.176 kb on - strand, within ECD_04066 at 4331.176 kb on - strand, within ECD_04066 at 4331.186 kb on + strand, within ECD_04066 at 4331.198 kb on - strand, within ECD_04066 at 4331.198 kb on - strand, within ECD_04066 at 4331.217 kb on + strand, within ECD_04066
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,328,396 + ECD_04062 0.36 -2.2 4,328,453 - ECD_04062 0.48 -0.3 4,328,655 + -0.4 4,328,655 + +0.2 4,328,690 + -1.1 4,328,691 - +0.5 4,328,691 - +0.3 4,328,723 - +0.7 4,328,723 - -0.4 4,328,927 + ECD_04063 0.34 -0.0 4,328,928 - ECD_04063 0.34 +0.6 4,328,928 - ECD_04063 0.34 +0.5 4,328,962 + ECD_04063 0.39 -0.2 4,329,007 + ECD_04063 0.46 -1.0 4,329,007 + ECD_04063 0.46 -0.1 4,329,164 + ECD_04063 0.70 -0.5 4,329,252 - ECD_04063 0.84 -2.0 4,329,365 + +1.2 4,329,396 + -1.6 4,329,485 - ECD_04064 0.14 +0.6 4,329,659 + ECD_04064 0.34 +0.4 4,329,660 - ECD_04064 0.34 -0.4 4,329,729 + ECD_04064 0.42 +0.1 4,329,729 + ECD_04064 0.42 -0.0 4,329,732 + ECD_04064 0.43 +0.1 4,329,732 + ECD_04064 0.43 +0.6 4,329,840 + ECD_04064 0.55 +0.7 4,329,886 - ECD_04064 0.61 +0.6 4,329,983 + ECD_04064 0.72 +0.2 4,329,994 + ECD_04064 0.73 -0.2 4,329,994 + ECD_04064 0.73 +0.7 4,329,994 + ECD_04064 0.73 -0.0 4,329,994 + ECD_04064 0.73 +0.5 4,329,995 - ECD_04064 0.74 -0.1 4,329,995 - ECD_04064 0.74 +0.3 4,329,995 - ECD_04064 0.74 -0.9 4,330,095 + ECD_04064 0.85 -0.2 4,330,242 + +0.5 4,330,242 + +0.7 4,330,243 - +0.4 4,330,288 + +0.8 4,330,397 - ECD_04065 0.26 +0.1 4,330,397 - ECD_04065 0.26 -0.5 4,330,575 - ECD_04065 0.52 -0.2 4,330,694 - ECD_04065 0.69 +0.4 4,330,694 - ECD_04065 0.69 -0.6 4,330,694 - ECD_04065 0.69 +1.9 4,330,712 + ECD_04065 0.72 -0.3 4,330,813 + ECD_04065 0.86 +0.8 4,330,813 + ECD_04065 0.86 +0.9 4,330,814 - ECD_04065 0.86 +0.2 4,330,816 + ECD_04065 0.87 -1.5 4,330,817 - ECD_04065 0.87 +0.7 4,330,889 + +0.3 4,330,893 - -0.3 4,330,905 - -0.5 4,330,905 - +1.4 4,330,942 - -0.4 4,330,942 - -0.6 4,331,004 + +0.1 4,331,005 - +0.2 4,331,026 + -0.2 4,331,026 + -0.3 4,331,027 - +0.4 4,331,064 + ECD_04066 0.11 +0.3 4,331,073 + ECD_04066 0.14 +1.1 4,331,106 - ECD_04066 0.26 +0.0 4,331,106 - ECD_04066 0.26 +0.3 4,331,109 - ECD_04066 0.27 +1.0 4,331,109 - ECD_04066 0.27 -0.3 4,331,109 - ECD_04066 0.27 +0.5 4,331,140 + ECD_04066 0.38 -0.2 4,331,140 + ECD_04066 0.38 +0.0 4,331,141 - ECD_04066 0.38 -0.9 4,331,176 - ECD_04066 0.51 +0.4 4,331,176 - ECD_04066 0.51 -0.5 4,331,176 - ECD_04066 0.51 +0.5 4,331,186 + ECD_04066 0.55 +0.7 4,331,198 - ECD_04066 0.59 +0.4 4,331,198 - ECD_04066 0.59 -1.5 4,331,217 + ECD_04066 0.66 +0.1
Or see this region's nucleotide sequence