Strain Fitness in Escherichia coli BL21 around ECD_04064

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04062 and ECD_04063 are separated by 13 nucleotidesECD_04063 and ECD_04064 are separated by 9 nucleotidesECD_04064 and ECD_04065 overlap by 1 nucleotidesECD_04065 and ECD_04066 are separated by 128 nucleotides ECD_04062: ECD_04062 - L-ascorbate-specific enzyme IIA component of PTS, at 4,328,228 to 4,328,692 _04062 ECD_04063: ECD_04063 - 3-keto-L-gulonate 6-phosphate decarboxylase, at 4,328,706 to 4,329,356 _04063 ECD_04064: ECD_04064 - L-xylulose 5-phosphate 3-epimerase, at 4,329,366 to 4,330,220 _04064 ECD_04065: ECD_04065 - L-ribulose 5-phosphate 4-epimerase, at 4,330,220 to 4,330,906 _04065 ECD_04066: ECD_04066 - YhcN family protein, periplasmic, at 4,331,035 to 4,331,310 _04066 Position (kb) 4329 4330 4331Strain fitness (log2 ratio) -2 -1 0 1 2at 4328.396 kb on + strand, within ECD_04062at 4328.453 kb on - strand, within ECD_04062at 4328.655 kb on + strandat 4328.655 kb on + strandat 4328.690 kb on + strandat 4328.691 kb on - strandat 4328.691 kb on - strandat 4328.723 kb on - strandat 4328.723 kb on - strandat 4328.927 kb on + strand, within ECD_04063at 4328.928 kb on - strand, within ECD_04063at 4328.928 kb on - strand, within ECD_04063at 4328.962 kb on + strand, within ECD_04063at 4329.007 kb on + strand, within ECD_04063at 4329.007 kb on + strand, within ECD_04063at 4329.164 kb on + strand, within ECD_04063at 4329.252 kb on - strand, within ECD_04063at 4329.365 kb on + strandat 4329.396 kb on + strandat 4329.485 kb on - strand, within ECD_04064at 4329.659 kb on + strand, within ECD_04064at 4329.660 kb on - strand, within ECD_04064at 4329.729 kb on + strand, within ECD_04064at 4329.729 kb on + strand, within ECD_04064at 4329.732 kb on + strand, within ECD_04064at 4329.732 kb on + strand, within ECD_04064at 4329.840 kb on + strand, within ECD_04064at 4329.886 kb on - strand, within ECD_04064at 4329.983 kb on + strand, within ECD_04064at 4329.994 kb on + strand, within ECD_04064at 4329.994 kb on + strand, within ECD_04064at 4329.994 kb on + strand, within ECD_04064at 4329.994 kb on + strand, within ECD_04064at 4329.995 kb on - strand, within ECD_04064at 4329.995 kb on - strand, within ECD_04064at 4329.995 kb on - strand, within ECD_04064at 4330.095 kb on + strand, within ECD_04064at 4330.242 kb on + strandat 4330.242 kb on + strandat 4330.243 kb on - strandat 4330.288 kb on + strandat 4330.397 kb on - strand, within ECD_04065at 4330.397 kb on - strand, within ECD_04065at 4330.575 kb on - strand, within ECD_04065at 4330.694 kb on - strand, within ECD_04065at 4330.694 kb on - strand, within ECD_04065at 4330.694 kb on - strand, within ECD_04065at 4330.712 kb on + strand, within ECD_04065at 4330.813 kb on + strand, within ECD_04065at 4330.813 kb on + strand, within ECD_04065at 4330.814 kb on - strand, within ECD_04065at 4330.816 kb on + strand, within ECD_04065at 4330.817 kb on - strand, within ECD_04065at 4330.889 kb on + strandat 4330.893 kb on - strandat 4330.905 kb on - strandat 4330.905 kb on - strandat 4330.942 kb on - strandat 4330.942 kb on - strandat 4331.004 kb on + strandat 4331.005 kb on - strandat 4331.026 kb on + strandat 4331.026 kb on + strandat 4331.027 kb on - strandat 4331.064 kb on + strand, within ECD_04066at 4331.073 kb on + strand, within ECD_04066at 4331.106 kb on - strand, within ECD_04066at 4331.106 kb on - strand, within ECD_04066at 4331.109 kb on - strand, within ECD_04066at 4331.109 kb on - strand, within ECD_04066at 4331.109 kb on - strand, within ECD_04066at 4331.140 kb on + strand, within ECD_04066at 4331.140 kb on + strand, within ECD_04066at 4331.141 kb on - strand, within ECD_04066at 4331.176 kb on - strand, within ECD_04066at 4331.176 kb on - strand, within ECD_04066at 4331.176 kb on - strand, within ECD_04066at 4331.186 kb on + strand, within ECD_04066at 4331.198 kb on - strand, within ECD_04066at 4331.198 kb on - strand, within ECD_04066at 4331.217 kb on + strand, within ECD_04066

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,328,396 + ECD_04062 0.36 -2.2
4,328,453 - ECD_04062 0.48 -0.3
4,328,655 + -0.4
4,328,655 + +0.2
4,328,690 + -1.1
4,328,691 - +0.5
4,328,691 - +0.3
4,328,723 - +0.7
4,328,723 - -0.4
4,328,927 + ECD_04063 0.34 -0.0
4,328,928 - ECD_04063 0.34 +0.6
4,328,928 - ECD_04063 0.34 +0.5
4,328,962 + ECD_04063 0.39 -0.2
4,329,007 + ECD_04063 0.46 -1.0
4,329,007 + ECD_04063 0.46 -0.1
4,329,164 + ECD_04063 0.70 -0.5
4,329,252 - ECD_04063 0.84 -2.0
4,329,365 + +1.2
4,329,396 + -1.6
4,329,485 - ECD_04064 0.14 +0.6
4,329,659 + ECD_04064 0.34 +0.4
4,329,660 - ECD_04064 0.34 -0.4
4,329,729 + ECD_04064 0.42 +0.1
4,329,729 + ECD_04064 0.42 -0.0
4,329,732 + ECD_04064 0.43 +0.1
4,329,732 + ECD_04064 0.43 +0.6
4,329,840 + ECD_04064 0.55 +0.7
4,329,886 - ECD_04064 0.61 +0.6
4,329,983 + ECD_04064 0.72 +0.2
4,329,994 + ECD_04064 0.73 -0.2
4,329,994 + ECD_04064 0.73 +0.7
4,329,994 + ECD_04064 0.73 -0.0
4,329,994 + ECD_04064 0.73 +0.5
4,329,995 - ECD_04064 0.74 -0.1
4,329,995 - ECD_04064 0.74 +0.3
4,329,995 - ECD_04064 0.74 -0.9
4,330,095 + ECD_04064 0.85 -0.2
4,330,242 + +0.5
4,330,242 + +0.7
4,330,243 - +0.4
4,330,288 + +0.8
4,330,397 - ECD_04065 0.26 +0.1
4,330,397 - ECD_04065 0.26 -0.5
4,330,575 - ECD_04065 0.52 -0.2
4,330,694 - ECD_04065 0.69 +0.4
4,330,694 - ECD_04065 0.69 -0.6
4,330,694 - ECD_04065 0.69 +1.9
4,330,712 + ECD_04065 0.72 -0.3
4,330,813 + ECD_04065 0.86 +0.8
4,330,813 + ECD_04065 0.86 +0.9
4,330,814 - ECD_04065 0.86 +0.2
4,330,816 + ECD_04065 0.87 -1.5
4,330,817 - ECD_04065 0.87 +0.7
4,330,889 + +0.3
4,330,893 - -0.3
4,330,905 - -0.5
4,330,905 - +1.4
4,330,942 - -0.4
4,330,942 - -0.6
4,331,004 + +0.1
4,331,005 - +0.2
4,331,026 + -0.2
4,331,026 + -0.3
4,331,027 - +0.4
4,331,064 + ECD_04066 0.11 +0.3
4,331,073 + ECD_04066 0.14 +1.1
4,331,106 - ECD_04066 0.26 +0.0
4,331,106 - ECD_04066 0.26 +0.3
4,331,109 - ECD_04066 0.27 +1.0
4,331,109 - ECD_04066 0.27 -0.3
4,331,109 - ECD_04066 0.27 +0.5
4,331,140 + ECD_04066 0.38 -0.2
4,331,140 + ECD_04066 0.38 +0.0
4,331,141 - ECD_04066 0.38 -0.9
4,331,176 - ECD_04066 0.51 +0.4
4,331,176 - ECD_04066 0.51 -0.5
4,331,176 - ECD_04066 0.51 +0.5
4,331,186 + ECD_04066 0.55 +0.7
4,331,198 - ECD_04066 0.59 +0.4
4,331,198 - ECD_04066 0.59 -1.5
4,331,217 + ECD_04066 0.66 +0.1

Or see this region's nucleotide sequence