Strain Fitness in Escherichia coli BL21 around ECD_04059

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04057 and ECD_04058 overlap by 4 nucleotidesECD_04058 and ECD_04059 are separated by 107 nucleotidesECD_04059 and ECD_04060 are separated by 354 nucleotides ECD_04057: ECD_04057 - acyl CoA esterase, at 4,323,472 to 4,324,221 _04057 ECD_04058: ECD_04058 - transcriptional repressor for the L-ascorbate utilization divergent operon, at 4,324,218 to 4,324,973 _04058 ECD_04059: ECD_04059 - L-ascorbate 6-phosphate lactonase, at 4,325,081 to 4,326,145 _04059 ECD_04060: ECD_04060 - L-ascorbate-specific enzyme IIC permease component of PTS, at 4,326,500 to 4,327,897 _04060 Position (kb) 4325 4326 4327Strain fitness (log2 ratio) -2 -1 0 1 2at 4324.088 kb on + strand, within ECD_04057at 4324.171 kb on - strandat 4324.185 kb on - strandat 4324.350 kb on - strand, within ECD_04058at 4324.350 kb on - strand, within ECD_04058at 4324.422 kb on - strand, within ECD_04058at 4324.431 kb on - strand, within ECD_04058at 4324.431 kb on - strand, within ECD_04058at 4324.431 kb on - strand, within ECD_04058at 4324.467 kb on - strand, within ECD_04058at 4324.487 kb on - strand, within ECD_04058at 4324.487 kb on - strand, within ECD_04058at 4324.541 kb on - strand, within ECD_04058at 4324.589 kb on - strand, within ECD_04058at 4324.607 kb on - strand, within ECD_04058at 4324.607 kb on - strand, within ECD_04058at 4324.611 kb on - strand, within ECD_04058at 4324.611 kb on - strand, within ECD_04058at 4324.684 kb on - strand, within ECD_04058at 4324.684 kb on - strand, within ECD_04058at 4324.732 kb on - strand, within ECD_04058at 4324.732 kb on - strand, within ECD_04058at 4324.800 kb on - strand, within ECD_04058at 4324.800 kb on - strand, within ECD_04058at 4325.009 kb on + strandat 4325.052 kb on - strandat 4325.070 kb on + strandat 4325.082 kb on + strandat 4325.083 kb on - strandat 4325.117 kb on - strandat 4325.145 kb on + strandat 4325.152 kb on - strandat 4325.206 kb on + strand, within ECD_04059at 4325.224 kb on - strand, within ECD_04059at 4325.224 kb on - strand, within ECD_04059at 4325.297 kb on - strand, within ECD_04059at 4325.401 kb on - strand, within ECD_04059at 4325.451 kb on + strand, within ECD_04059at 4325.451 kb on + strand, within ECD_04059at 4325.452 kb on - strand, within ECD_04059at 4325.452 kb on - strand, within ECD_04059at 4325.455 kb on + strand, within ECD_04059at 4325.456 kb on - strand, within ECD_04059at 4325.456 kb on - strand, within ECD_04059at 4325.481 kb on + strand, within ECD_04059at 4325.482 kb on - strand, within ECD_04059at 4325.512 kb on - strand, within ECD_04059at 4325.512 kb on - strand, within ECD_04059at 4325.730 kb on - strand, within ECD_04059at 4325.730 kb on - strand, within ECD_04059at 4326.083 kb on - strandat 4326.571 kb on + strandat 4326.590 kb on + strandat 4326.598 kb on - strandat 4326.625 kb on + strandat 4326.637 kb on + strandat 4326.645 kb on + strand, within ECD_04060at 4326.754 kb on + strand, within ECD_04060at 4326.758 kb on + strand, within ECD_04060at 4326.800 kb on + strand, within ECD_04060at 4326.800 kb on + strand, within ECD_04060at 4326.802 kb on + strand, within ECD_04060at 4326.802 kb on + strand, within ECD_04060at 4326.802 kb on + strand, within ECD_04060at 4326.803 kb on - strand, within ECD_04060at 4326.803 kb on - strand, within ECD_04060at 4326.803 kb on - strand, within ECD_04060at 4326.852 kb on - strand, within ECD_04060at 4326.883 kb on + strand, within ECD_04060at 4326.905 kb on - strand, within ECD_04060at 4326.937 kb on + strand, within ECD_04060at 4326.937 kb on + strand, within ECD_04060at 4326.976 kb on + strand, within ECD_04060at 4327.004 kb on + strand, within ECD_04060at 4327.015 kb on + strand, within ECD_04060at 4327.016 kb on - strand, within ECD_04060at 4327.016 kb on - strand, within ECD_04060at 4327.031 kb on + strand, within ECD_04060at 4327.031 kb on + strand, within ECD_04060at 4327.032 kb on - strand, within ECD_04060

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,324,088 + ECD_04057 0.82 -0.1
4,324,171 - -1.0
4,324,185 - -0.1
4,324,350 - ECD_04058 0.17 +1.9
4,324,350 - ECD_04058 0.17 +2.1
4,324,422 - ECD_04058 0.27 +0.8
4,324,431 - ECD_04058 0.28 +1.2
4,324,431 - ECD_04058 0.28 +0.7
4,324,431 - ECD_04058 0.28 +2.1
4,324,467 - ECD_04058 0.33 -0.8
4,324,487 - ECD_04058 0.36 +0.8
4,324,487 - ECD_04058 0.36 +0.9
4,324,541 - ECD_04058 0.43 +0.3
4,324,589 - ECD_04058 0.49 +0.7
4,324,607 - ECD_04058 0.51 +0.7
4,324,607 - ECD_04058 0.51 -0.1
4,324,611 - ECD_04058 0.52 +0.9
4,324,611 - ECD_04058 0.52 -0.6
4,324,684 - ECD_04058 0.62 +0.7
4,324,684 - ECD_04058 0.62 -0.0
4,324,732 - ECD_04058 0.68 +0.1
4,324,732 - ECD_04058 0.68 -0.4
4,324,800 - ECD_04058 0.77 +0.7
4,324,800 - ECD_04058 0.77 +0.4
4,325,009 + -0.2
4,325,052 - -0.4
4,325,070 + -0.9
4,325,082 + -1.0
4,325,083 - -0.5
4,325,117 - -0.9
4,325,145 + -1.0
4,325,152 - -0.2
4,325,206 + ECD_04059 0.12 +0.7
4,325,224 - ECD_04059 0.13 +0.3
4,325,224 - ECD_04059 0.13 -0.7
4,325,297 - ECD_04059 0.20 -1.7
4,325,401 - ECD_04059 0.30 -2.2
4,325,451 + ECD_04059 0.35 -0.7
4,325,451 + ECD_04059 0.35 +0.8
4,325,452 - ECD_04059 0.35 +1.0
4,325,452 - ECD_04059 0.35 +0.6
4,325,455 + ECD_04059 0.35 +0.2
4,325,456 - ECD_04059 0.35 -1.1
4,325,456 - ECD_04059 0.35 +0.9
4,325,481 + ECD_04059 0.38 -0.5
4,325,482 - ECD_04059 0.38 -0.1
4,325,512 - ECD_04059 0.40 -0.7
4,325,512 - ECD_04059 0.40 +0.8
4,325,730 - ECD_04059 0.61 -1.0
4,325,730 - ECD_04059 0.61 +0.2
4,326,083 - +0.7
4,326,571 + +0.6
4,326,590 + -1.0
4,326,598 - -0.9
4,326,625 + -0.3
4,326,637 + -1.6
4,326,645 + ECD_04060 0.10 +0.8
4,326,754 + ECD_04060 0.18 +0.8
4,326,758 + ECD_04060 0.18 +0.3
4,326,800 + ECD_04060 0.21 +0.9
4,326,800 + ECD_04060 0.21 -0.7
4,326,802 + ECD_04060 0.22 +0.2
4,326,802 + ECD_04060 0.22 -0.2
4,326,802 + ECD_04060 0.22 -0.6
4,326,803 - ECD_04060 0.22 +0.9
4,326,803 - ECD_04060 0.22 -0.4
4,326,803 - ECD_04060 0.22 +0.7
4,326,852 - ECD_04060 0.25 +1.0
4,326,883 + ECD_04060 0.27 +0.1
4,326,905 - ECD_04060 0.29 +1.1
4,326,937 + ECD_04060 0.31 -0.6
4,326,937 + ECD_04060 0.31 +1.1
4,326,976 + ECD_04060 0.34 +0.1
4,327,004 + ECD_04060 0.36 -0.2
4,327,015 + ECD_04060 0.37 -0.1
4,327,016 - ECD_04060 0.37 -0.5
4,327,016 - ECD_04060 0.37 -0.2
4,327,031 + ECD_04060 0.38 +0.3
4,327,031 + ECD_04060 0.38 +0.1
4,327,032 - ECD_04060 0.38 -0.4

Or see this region's nucleotide sequence