Strain Fitness in Escherichia coli BL21 around ECD_03949

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03947 and ECD_03948 overlap by 4 nucleotidesECD_03948 and ECD_03949 are separated by 341 nucleotidesECD_03949 and ECD_03950 are separated by 416 nucleotides ECD_03947: ECD_03947 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF, at 4,200,575 to 4,200,958 _03947 ECD_03948: ECD_03948 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG, at 4,200,955 to 4,201,551 _03948 ECD_03949: ECD_03949 - glutamate/aspartate:proton symporter, at 4,201,893 to 4,203,206 _03949 ECD_03950: ECD_03950 - Sel1 family TPR-like repeat protein, at 4,203,623 to 4,204,312 _03950 Position (kb) 4201 4202 4203 4204Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4200.912 kb on + strand, within ECD_03947at 4200.913 kb on - strand, within ECD_03947at 4200.915 kb on + strand, within ECD_03947at 4201.001 kb on + strandat 4201.058 kb on + strand, within ECD_03948at 4201.139 kb on + strand, within ECD_03948at 4201.198 kb on + strand, within ECD_03948at 4201.201 kb on + strand, within ECD_03948at 4201.202 kb on - strand, within ECD_03948at 4201.219 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.259 kb on + strand, within ECD_03948at 4201.260 kb on - strand, within ECD_03948at 4201.260 kb on - strand, within ECD_03948at 4201.260 kb on - strand, within ECD_03948at 4201.309 kb on + strand, within ECD_03948at 4201.310 kb on - strand, within ECD_03948at 4201.326 kb on + strand, within ECD_03948at 4201.327 kb on - strand, within ECD_03948at 4201.451 kb on + strand, within ECD_03948at 4201.452 kb on - strand, within ECD_03948at 4201.452 kb on - strand, within ECD_03948at 4201.550 kb on - strandat 4201.571 kb on - strandat 4201.571 kb on - strandat 4201.759 kb on + strandat 4201.760 kb on - strandat 4201.774 kb on - strandat 4201.834 kb on + strandat 4201.834 kb on + strandat 4201.834 kb on + strandat 4201.886 kb on + strandat 4201.887 kb on - strandat 4201.887 kb on - strandat 4201.938 kb on - strandat 4201.965 kb on + strandat 4201.965 kb on + strandat 4201.974 kb on + strandat 4201.974 kb on + strandat 4201.974 kb on + strandat 4202.147 kb on + strand, within ECD_03949at 4202.151 kb on + strand, within ECD_03949at 4202.231 kb on + strand, within ECD_03949at 4202.232 kb on - strand, within ECD_03949at 4202.232 kb on - strand, within ECD_03949at 4202.232 kb on - strand, within ECD_03949at 4202.265 kb on + strand, within ECD_03949at 4202.484 kb on - strand, within ECD_03949at 4202.552 kb on + strand, within ECD_03949at 4202.553 kb on - strand, within ECD_03949at 4202.633 kb on - strand, within ECD_03949at 4202.687 kb on + strand, within ECD_03949at 4202.715 kb on + strand, within ECD_03949at 4202.772 kb on + strand, within ECD_03949at 4202.773 kb on - strand, within ECD_03949at 4202.855 kb on + strand, within ECD_03949at 4202.856 kb on - strand, within ECD_03949at 4202.856 kb on - strand, within ECD_03949at 4203.003 kb on - strand, within ECD_03949at 4203.007 kb on + strand, within ECD_03949at 4203.007 kb on + strand, within ECD_03949at 4203.008 kb on - strand, within ECD_03949at 4203.011 kb on + strand, within ECD_03949at 4203.054 kb on - strand, within ECD_03949at 4203.092 kb on + strandat 4203.160 kb on - strandat 4203.205 kb on - strandat 4203.271 kb on + strandat 4203.297 kb on + strandat 4203.320 kb on + strandat 4203.338 kb on + strandat 4203.339 kb on - strandat 4203.533 kb on + strandat 4203.620 kb on - strandat 4203.676 kb on + strandat 4203.677 kb on - strandat 4203.970 kb on + strand, within ECD_03950at 4203.970 kb on + strand, within ECD_03950at 4203.971 kb on - strand, within ECD_03950at 4203.974 kb on + strand, within ECD_03950at 4203.995 kb on + strand, within ECD_03950at 4204.147 kb on - strand, within ECD_03950at 4204.175 kb on - strand, within ECD_03950

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,200,912 + ECD_03947 0.88 +1.7
4,200,913 - ECD_03947 0.88 -0.4
4,200,915 + ECD_03947 0.89 -0.0
4,201,001 + +0.6
4,201,058 + ECD_03948 0.17 +0.2
4,201,139 + ECD_03948 0.31 -0.0
4,201,198 + ECD_03948 0.41 +0.2
4,201,201 + ECD_03948 0.41 -1.2
4,201,202 - ECD_03948 0.41 +0.3
4,201,219 + ECD_03948 0.44 +1.6
4,201,259 + ECD_03948 0.51 +1.4
4,201,259 + ECD_03948 0.51 +0.1
4,201,259 + ECD_03948 0.51 +0.7
4,201,259 + ECD_03948 0.51 -0.7
4,201,259 + ECD_03948 0.51 +2.4
4,201,259 + ECD_03948 0.51 +0.9
4,201,259 + ECD_03948 0.51 -1.1
4,201,260 - ECD_03948 0.51 -0.5
4,201,260 - ECD_03948 0.51 +1.1
4,201,260 - ECD_03948 0.51 -1.4
4,201,309 + ECD_03948 0.59 -0.2
4,201,310 - ECD_03948 0.59 +0.6
4,201,326 + ECD_03948 0.62 -0.2
4,201,327 - ECD_03948 0.62 +0.1
4,201,451 + ECD_03948 0.83 +3.2
4,201,452 - ECD_03948 0.83 -0.3
4,201,452 - ECD_03948 0.83 +0.5
4,201,550 - +0.8
4,201,571 - +0.9
4,201,571 - -1.4
4,201,759 + +0.7
4,201,760 - -1.2
4,201,774 - -0.1
4,201,834 + -0.5
4,201,834 + +0.6
4,201,834 + +0.1
4,201,886 + -1.7
4,201,887 - -2.6
4,201,887 - -0.1
4,201,938 - -0.6
4,201,965 + -0.2
4,201,965 + +0.6
4,201,974 + -1.3
4,201,974 + -0.2
4,201,974 + -0.8
4,202,147 + ECD_03949 0.19 -0.6
4,202,151 + ECD_03949 0.20 -0.2
4,202,231 + ECD_03949 0.26 -1.4
4,202,232 - ECD_03949 0.26 +0.1
4,202,232 - ECD_03949 0.26 -0.4
4,202,232 - ECD_03949 0.26 -0.5
4,202,265 + ECD_03949 0.28 -1.9
4,202,484 - ECD_03949 0.45 -0.2
4,202,552 + ECD_03949 0.50 -0.6
4,202,553 - ECD_03949 0.50 -1.0
4,202,633 - ECD_03949 0.56 -0.4
4,202,687 + ECD_03949 0.60 -0.8
4,202,715 + ECD_03949 0.63 +0.1
4,202,772 + ECD_03949 0.67 +1.1
4,202,773 - ECD_03949 0.67 +0.6
4,202,855 + ECD_03949 0.73 -0.8
4,202,856 - ECD_03949 0.73 +0.1
4,202,856 - ECD_03949 0.73 +0.2
4,203,003 - ECD_03949 0.84 -1.2
4,203,007 + ECD_03949 0.85 -0.5
4,203,007 + ECD_03949 0.85 -0.5
4,203,008 - ECD_03949 0.85 -0.3
4,203,011 + ECD_03949 0.85 -0.7
4,203,054 - ECD_03949 0.88 -1.0
4,203,092 + -0.9
4,203,160 - +0.5
4,203,205 - +0.4
4,203,271 + +0.3
4,203,297 + +0.7
4,203,320 + -1.5
4,203,338 + -1.8
4,203,339 - +0.3
4,203,533 + -0.4
4,203,620 - -1.4
4,203,676 + -0.7
4,203,677 - -1.1
4,203,970 + ECD_03950 0.50 +0.5
4,203,970 + ECD_03950 0.50 +0.9
4,203,971 - ECD_03950 0.50 +0.5
4,203,974 + ECD_03950 0.51 +1.3
4,203,995 + ECD_03950 0.54 +0.4
4,204,147 - ECD_03950 0.76 -0.5
4,204,175 - ECD_03950 0.80 -1.8

Or see this region's nucleotide sequence