Strain Fitness in Escherichia coli BL21 around ECD_03899

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03897 and ECD_03898 are separated by 498 nucleotidesECD_03898 and ECD_03899 are separated by 114 nucleotidesECD_03899 and ECD_03900 overlap by 4 nucleotidesECD_03900 and ECD_03901 overlap by 1 nucleotides ECD_03897: ECD_03897 - glucosephosphate isomerase, at 4,141,129 to 4,142,778 _03897 ECD_03898: ECD_03898 - extracellular polysaccharide production threonine-rich protein, at 4,143,277 to 4,143,519 _03898 ECD_03899: ECD_03899 - extracellular polysaccharide production lipoprotein, at 4,143,634 to 4,144,272 _03899 ECD_03900: ECD_03900 - extracellular polysaccharide export OMA protein, at 4,144,269 to 4,145,006 _03900 ECD_03901: ECD_03901 - DUF940 family extracellular polysaccharide protein, at 4,145,006 to 4,147,102 _03901 Position (kb) 4143 4144 4145Strain fitness (log2 ratio) -2 -1 0 1at 4142.789 kb on + strandat 4142.790 kb on - strandat 4142.858 kb on - strandat 4142.867 kb on - strandat 4142.883 kb on - strandat 4142.883 kb on - strandat 4142.883 kb on - strandat 4142.886 kb on + strandat 4142.886 kb on + strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.887 kb on - strandat 4142.907 kb on + strandat 4142.908 kb on - strandat 4142.908 kb on - strandat 4143.425 kb on + strand, within ECD_03898at 4143.426 kb on - strand, within ECD_03898at 4143.477 kb on + strand, within ECD_03898at 4143.511 kb on - strandat 4143.520 kb on + strandat 4143.521 kb on - strandat 4143.525 kb on + strandat 4143.525 kb on + strandat 4143.525 kb on + strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.526 kb on - strandat 4143.529 kb on + strandat 4143.530 kb on - strandat 4143.571 kb on + strandat 4143.771 kb on + strand, within ECD_03899at 4143.790 kb on + strand, within ECD_03899at 4143.790 kb on + strand, within ECD_03899at 4143.801 kb on + strand, within ECD_03899at 4144.030 kb on + strand, within ECD_03899at 4144.032 kb on + strand, within ECD_03899at 4144.032 kb on + strand, within ECD_03899at 4144.032 kb on + strand, within ECD_03899at 4144.041 kb on - strand, within ECD_03899at 4144.213 kb on + strandat 4144.214 kb on - strandat 4144.274 kb on + strandat 4144.275 kb on - strandat 4144.275 kb on - strandat 4144.397 kb on - strand, within ECD_03900at 4144.567 kb on + strand, within ECD_03900at 4144.567 kb on + strand, within ECD_03900at 4144.568 kb on - strand, within ECD_03900at 4144.674 kb on + strand, within ECD_03900at 4144.674 kb on + strand, within ECD_03900at 4144.675 kb on - strand, within ECD_03900at 4144.675 kb on - strand, within ECD_03900at 4144.724 kb on + strand, within ECD_03900at 4144.777 kb on - strand, within ECD_03900at 4144.777 kb on - strand, within ECD_03900at 4144.777 kb on - strand, within ECD_03900at 4144.777 kb on - strand, within ECD_03900at 4144.819 kb on - strand, within ECD_03900at 4144.910 kb on + strand, within ECD_03900at 4144.910 kb on + strand, within ECD_03900at 4144.911 kb on - strand, within ECD_03900at 4144.911 kb on - strand, within ECD_03900at 4144.911 kb on - strand, within ECD_03900at 4144.911 kb on - strand, within ECD_03900at 4144.914 kb on + strand, within ECD_03900at 4144.914 kb on + strand, within ECD_03900at 4144.914 kb on + strand, within ECD_03900at 4144.914 kb on + strand, within ECD_03900at 4144.915 kb on - strand, within ECD_03900at 4144.915 kb on - strand, within ECD_03900at 4144.915 kb on - strand, within ECD_03900at 4145.005 kb on - strandat 4145.026 kb on + strandat 4145.027 kb on - strandat 4145.072 kb on + strandat 4145.121 kb on + strandat 4145.124 kb on + strandat 4145.124 kb on + strandat 4145.125 kb on - strandat 4145.125 kb on - strandat 4145.192 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,142,789 + +0.5
4,142,790 - +0.8
4,142,858 - +0.4
4,142,867 - +1.7
4,142,883 - -2.4
4,142,883 - +1.5
4,142,883 - +0.4
4,142,886 + +0.3
4,142,886 + +0.1
4,142,887 - +0.5
4,142,887 - -0.7
4,142,887 - -0.9
4,142,887 - +0.7
4,142,887 - -1.4
4,142,887 - +0.3
4,142,907 + -0.2
4,142,908 - +0.1
4,142,908 - -1.4
4,143,425 + ECD_03898 0.61 +0.8
4,143,426 - ECD_03898 0.61 +0.4
4,143,477 + ECD_03898 0.82 +1.2
4,143,511 - -0.9
4,143,520 + -0.9
4,143,521 - -0.2
4,143,525 + +0.1
4,143,525 + -2.6
4,143,525 + -1.6
4,143,526 - +0.8
4,143,526 - +0.7
4,143,526 - +0.5
4,143,526 - +0.5
4,143,526 - +0.2
4,143,529 + -0.2
4,143,530 - +0.6
4,143,571 + -0.3
4,143,771 + ECD_03899 0.21 -1.7
4,143,790 + ECD_03899 0.24 -0.9
4,143,790 + ECD_03899 0.24 -0.7
4,143,801 + ECD_03899 0.26 +0.2
4,144,030 + ECD_03899 0.62 -0.1
4,144,032 + ECD_03899 0.62 +1.3
4,144,032 + ECD_03899 0.62 -1.2
4,144,032 + ECD_03899 0.62 +0.0
4,144,041 - ECD_03899 0.64 +0.0
4,144,213 + +0.7
4,144,214 - +0.5
4,144,274 + +0.6
4,144,275 - -1.7
4,144,275 - -1.7
4,144,397 - ECD_03900 0.17 +0.2
4,144,567 + ECD_03900 0.40 +1.3
4,144,567 + ECD_03900 0.40 -0.1
4,144,568 - ECD_03900 0.41 +0.2
4,144,674 + ECD_03900 0.55 -0.1
4,144,674 + ECD_03900 0.55 -2.0
4,144,675 - ECD_03900 0.55 +0.3
4,144,675 - ECD_03900 0.55 -0.3
4,144,724 + ECD_03900 0.62 +0.9
4,144,777 - ECD_03900 0.69 -2.4
4,144,777 - ECD_03900 0.69 +0.2
4,144,777 - ECD_03900 0.69 +0.1
4,144,777 - ECD_03900 0.69 -0.4
4,144,819 - ECD_03900 0.75 -0.3
4,144,910 + ECD_03900 0.87 -0.8
4,144,910 + ECD_03900 0.87 +0.7
4,144,911 - ECD_03900 0.87 -0.5
4,144,911 - ECD_03900 0.87 -0.9
4,144,911 - ECD_03900 0.87 +0.6
4,144,911 - ECD_03900 0.87 +0.1
4,144,914 + ECD_03900 0.87 +0.8
4,144,914 + ECD_03900 0.87 +0.4
4,144,914 + ECD_03900 0.87 -0.8
4,144,914 + ECD_03900 0.87 -0.5
4,144,915 - ECD_03900 0.88 -0.1
4,144,915 - ECD_03900 0.88 -0.8
4,144,915 - ECD_03900 0.88 +0.2
4,145,005 - +0.4
4,145,026 + +0.1
4,145,027 - +0.0
4,145,072 + +0.2
4,145,121 + +0.1
4,145,124 + -0.6
4,145,124 + +0.8
4,145,125 - -1.0
4,145,125 - -0.0
4,145,192 + +1.0

Or see this region's nucleotide sequence