Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03822 and ECD_03823 are separated by 6 nucleotides ECD_03823 and ECD_03824 are separated by 183 nucleotides ECD_03824 and ECD_03825 are separated by 276 nucleotides
ECD_03822: ECD_03822 - putative outer membrane lipoprotein, at 4,035,203 to 4,035,826
_03822
ECD_03823: ECD_03823 - putative lipid binding hydrolase, DUF830 family protein, at 4,035,833 to 4,036,441
_03823
ECD_03824: ECD_03824 - transcriptional repressor, S-adenosylmethionine-binding, at 4,036,625 to 4,036,942
_03824
ECD_03825: ECD_03825 - cystathionine gamma-synthase, PLP-dependent, at 4,037,219 to 4,038,379
_03825
Position (kb)
4036
4037 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4035.715 kb on + strand, within ECD_03822 at 4035.717 kb on + strand, within ECD_03822 at 4035.718 kb on - strand, within ECD_03822 at 4035.721 kb on + strand, within ECD_03822 at 4035.721 kb on + strand, within ECD_03822 at 4035.721 kb on + strand, within ECD_03822 at 4035.722 kb on - strand, within ECD_03822 at 4035.722 kb on - strand, within ECD_03822 at 4035.722 kb on - strand, within ECD_03822 at 4035.724 kb on + strand, within ECD_03822 at 4035.724 kb on + strand, within ECD_03822 at 4035.724 kb on + strand, within ECD_03822 at 4035.835 kb on - strand at 4035.908 kb on + strand, within ECD_03823 at 4035.955 kb on + strand, within ECD_03823 at 4035.956 kb on - strand, within ECD_03823 at 4036.063 kb on - strand, within ECD_03823 at 4036.098 kb on + strand, within ECD_03823 at 4036.099 kb on - strand, within ECD_03823 at 4036.185 kb on + strand, within ECD_03823 at 4036.185 kb on + strand, within ECD_03823 at 4036.185 kb on + strand, within ECD_03823 at 4036.185 kb on + strand, within ECD_03823 at 4036.185 kb on + strand, within ECD_03823 at 4036.185 kb on + strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.186 kb on - strand, within ECD_03823 at 4036.231 kb on - strand, within ECD_03823 at 4036.277 kb on + strand, within ECD_03823 at 4036.277 kb on + strand, within ECD_03823 at 4036.277 kb on + strand, within ECD_03823 at 4036.301 kb on - strand, within ECD_03823 at 4036.301 kb on - strand, within ECD_03823 at 4036.333 kb on + strand, within ECD_03823 at 4036.333 kb on + strand, within ECD_03823 at 4036.400 kb on + strand at 4036.441 kb on + strand at 4036.441 kb on + strand at 4036.442 kb on - strand at 4036.442 kb on - strand at 4036.442 kb on - strand at 4036.445 kb on + strand at 4036.445 kb on + strand at 4036.446 kb on - strand at 4036.457 kb on + strand at 4036.457 kb on + strand at 4036.458 kb on - strand at 4036.458 kb on - strand at 4036.459 kb on + strand at 4036.460 kb on - strand at 4036.569 kb on - strand at 4036.627 kb on - strand at 4036.629 kb on + strand at 4036.629 kb on + strand at 4036.630 kb on - strand at 4037.020 kb on - strand at 4037.020 kb on - strand at 4037.081 kb on - strand at 4037.081 kb on - strand at 4037.083 kb on - strand at 4037.095 kb on + strand at 4037.095 kb on + strand at 4037.096 kb on - strand at 4037.118 kb on - strand at 4037.171 kb on - strand at 4037.227 kb on + strand at 4037.252 kb on - strand at 4037.276 kb on + strand at 4037.276 kb on + strand at 4037.277 kb on - strand at 4037.315 kb on + strand at 4037.316 kb on - strand at 4037.316 kb on - strand at 4037.332 kb on + strand at 4037.332 kb on + strand at 4037.527 kb on + strand, within ECD_03825 at 4037.646 kb on + strand, within ECD_03825 at 4037.647 kb on - strand, within ECD_03825 at 4037.659 kb on + strand, within ECD_03825 at 4037.738 kb on - strand, within ECD_03825 at 4037.748 kb on + strand, within ECD_03825 at 4037.761 kb on - strand, within ECD_03825 at 4037.778 kb on + strand, within ECD_03825 at 4037.778 kb on + strand, within ECD_03825 at 4037.778 kb on + strand, within ECD_03825 at 4037.779 kb on - strand, within ECD_03825 at 4037.813 kb on + strand, within ECD_03825 at 4037.814 kb on - strand, within ECD_03825 at 4037.835 kb on + strand, within ECD_03825 at 4037.835 kb on + strand, within ECD_03825 at 4037.835 kb on + strand, within ECD_03825 at 4037.836 kb on - strand, within ECD_03825 at 4037.857 kb on + strand, within ECD_03825 at 4037.858 kb on - strand, within ECD_03825 at 4037.858 kb on - strand, within ECD_03825 at 4037.933 kb on + strand, within ECD_03825 at 4037.934 kb on - strand, within ECD_03825 at 4037.934 kb on - strand, within ECD_03825
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,035,715 + ECD_03822 0.82 -0.1 4,035,717 + ECD_03822 0.82 +0.6 4,035,718 - ECD_03822 0.83 +0.7 4,035,721 + ECD_03822 0.83 +0.1 4,035,721 + ECD_03822 0.83 -0.9 4,035,721 + ECD_03822 0.83 +0.9 4,035,722 - ECD_03822 0.83 +0.8 4,035,722 - ECD_03822 0.83 -0.3 4,035,722 - ECD_03822 0.83 -1.0 4,035,724 + ECD_03822 0.83 +0.7 4,035,724 + ECD_03822 0.83 -0.0 4,035,724 + ECD_03822 0.83 -1.0 4,035,835 - +0.8 4,035,908 + ECD_03823 0.12 +0.2 4,035,955 + ECD_03823 0.20 +0.3 4,035,956 - ECD_03823 0.20 -0.3 4,036,063 - ECD_03823 0.38 +0.2 4,036,098 + ECD_03823 0.44 +0.0 4,036,099 - ECD_03823 0.44 +0.3 4,036,185 + ECD_03823 0.58 -2.1 4,036,185 + ECD_03823 0.58 -0.1 4,036,185 + ECD_03823 0.58 -0.3 4,036,185 + ECD_03823 0.58 -0.0 4,036,185 + ECD_03823 0.58 -0.5 4,036,185 + ECD_03823 0.58 -0.8 4,036,186 - ECD_03823 0.58 +0.3 4,036,186 - ECD_03823 0.58 +0.4 4,036,186 - ECD_03823 0.58 -1.3 4,036,186 - ECD_03823 0.58 -0.6 4,036,186 - ECD_03823 0.58 -1.0 4,036,186 - ECD_03823 0.58 +0.1 4,036,186 - ECD_03823 0.58 -0.1 4,036,231 - ECD_03823 0.65 +0.1 4,036,277 + ECD_03823 0.73 -0.4 4,036,277 + ECD_03823 0.73 +0.2 4,036,277 + ECD_03823 0.73 +0.3 4,036,301 - ECD_03823 0.77 -0.0 4,036,301 - ECD_03823 0.77 -2.8 4,036,333 + ECD_03823 0.82 +1.0 4,036,333 + ECD_03823 0.82 +0.2 4,036,400 + +0.2 4,036,441 + -0.0 4,036,441 + +1.2 4,036,442 - +0.1 4,036,442 - -0.4 4,036,442 - +0.5 4,036,445 + -0.6 4,036,445 + -1.7 4,036,446 - +0.5 4,036,457 + +1.5 4,036,457 + -0.6 4,036,458 - -1.1 4,036,458 - -0.4 4,036,459 + +0.4 4,036,460 - -1.0 4,036,569 - -0.4 4,036,627 - +1.0 4,036,629 + -1.2 4,036,629 + +1.0 4,036,630 - -0.1 4,037,020 - -0.0 4,037,020 - -1.3 4,037,081 - +0.3 4,037,081 - +0.8 4,037,083 - -0.5 4,037,095 + -0.1 4,037,095 + -2.0 4,037,096 - -0.5 4,037,118 - -0.9 4,037,171 - +1.4 4,037,227 + +0.5 4,037,252 - +0.1 4,037,276 + +1.5 4,037,276 + -0.7 4,037,277 - -0.6 4,037,315 + -1.1 4,037,316 - +1.8 4,037,316 - +0.5 4,037,332 + -1.8 4,037,332 + -0.0 4,037,527 + ECD_03825 0.27 +0.6 4,037,646 + ECD_03825 0.37 -1.9 4,037,647 - ECD_03825 0.37 -2.1 4,037,659 + ECD_03825 0.38 -0.5 4,037,738 - ECD_03825 0.45 -0.5 4,037,748 + ECD_03825 0.46 -1.8 4,037,761 - ECD_03825 0.47 -0.5 4,037,778 + ECD_03825 0.48 +0.3 4,037,778 + ECD_03825 0.48 -0.1 4,037,778 + ECD_03825 0.48 -0.6 4,037,779 - ECD_03825 0.48 -0.4 4,037,813 + ECD_03825 0.51 -0.2 4,037,814 - ECD_03825 0.51 +0.5 4,037,835 + ECD_03825 0.53 +0.5 4,037,835 + ECD_03825 0.53 -0.5 4,037,835 + ECD_03825 0.53 -0.7 4,037,836 - ECD_03825 0.53 +0.3 4,037,857 + ECD_03825 0.55 -0.4 4,037,858 - ECD_03825 0.55 +1.0 4,037,858 - ECD_03825 0.55 +0.5 4,037,933 + ECD_03825 0.61 +1.6 4,037,934 - ECD_03825 0.62 +2.2 4,037,934 - ECD_03825 0.62 +1.2
Or see this region's nucleotide sequence