Strain Fitness in Escherichia coli BL21 around ECD_03824

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03822 and ECD_03823 are separated by 6 nucleotidesECD_03823 and ECD_03824 are separated by 183 nucleotidesECD_03824 and ECD_03825 are separated by 276 nucleotides ECD_03822: ECD_03822 - putative outer membrane lipoprotein, at 4,035,203 to 4,035,826 _03822 ECD_03823: ECD_03823 - putative lipid binding hydrolase, DUF830 family protein, at 4,035,833 to 4,036,441 _03823 ECD_03824: ECD_03824 - transcriptional repressor, S-adenosylmethionine-binding, at 4,036,625 to 4,036,942 _03824 ECD_03825: ECD_03825 - cystathionine gamma-synthase, PLP-dependent, at 4,037,219 to 4,038,379 _03825 Position (kb) 4036 4037Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4035.715 kb on + strand, within ECD_03822at 4035.717 kb on + strand, within ECD_03822at 4035.718 kb on - strand, within ECD_03822at 4035.721 kb on + strand, within ECD_03822at 4035.721 kb on + strand, within ECD_03822at 4035.721 kb on + strand, within ECD_03822at 4035.722 kb on - strand, within ECD_03822at 4035.722 kb on - strand, within ECD_03822at 4035.722 kb on - strand, within ECD_03822at 4035.724 kb on + strand, within ECD_03822at 4035.724 kb on + strand, within ECD_03822at 4035.724 kb on + strand, within ECD_03822at 4035.835 kb on - strandat 4035.908 kb on + strand, within ECD_03823at 4035.955 kb on + strand, within ECD_03823at 4035.956 kb on - strand, within ECD_03823at 4036.063 kb on - strand, within ECD_03823at 4036.098 kb on + strand, within ECD_03823at 4036.099 kb on - strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.231 kb on - strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.301 kb on - strand, within ECD_03823at 4036.301 kb on - strand, within ECD_03823at 4036.333 kb on + strand, within ECD_03823at 4036.333 kb on + strand, within ECD_03823at 4036.400 kb on + strandat 4036.441 kb on + strandat 4036.441 kb on + strandat 4036.442 kb on - strandat 4036.442 kb on - strandat 4036.442 kb on - strandat 4036.445 kb on + strandat 4036.445 kb on + strandat 4036.446 kb on - strandat 4036.457 kb on + strandat 4036.457 kb on + strandat 4036.458 kb on - strandat 4036.458 kb on - strandat 4036.459 kb on + strandat 4036.460 kb on - strandat 4036.569 kb on - strandat 4036.627 kb on - strandat 4036.629 kb on + strandat 4036.629 kb on + strandat 4036.630 kb on - strandat 4037.020 kb on - strandat 4037.020 kb on - strandat 4037.081 kb on - strandat 4037.081 kb on - strandat 4037.083 kb on - strandat 4037.095 kb on + strandat 4037.095 kb on + strandat 4037.096 kb on - strandat 4037.118 kb on - strandat 4037.171 kb on - strandat 4037.227 kb on + strandat 4037.252 kb on - strandat 4037.276 kb on + strandat 4037.276 kb on + strandat 4037.277 kb on - strandat 4037.315 kb on + strandat 4037.316 kb on - strandat 4037.316 kb on - strandat 4037.332 kb on + strandat 4037.332 kb on + strandat 4037.527 kb on + strand, within ECD_03825at 4037.646 kb on + strand, within ECD_03825at 4037.647 kb on - strand, within ECD_03825at 4037.659 kb on + strand, within ECD_03825at 4037.738 kb on - strand, within ECD_03825at 4037.748 kb on + strand, within ECD_03825at 4037.761 kb on - strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.778 kb on + strand, within ECD_03825at 4037.779 kb on - strand, within ECD_03825at 4037.813 kb on + strand, within ECD_03825at 4037.814 kb on - strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.835 kb on + strand, within ECD_03825at 4037.836 kb on - strand, within ECD_03825at 4037.857 kb on + strand, within ECD_03825at 4037.858 kb on - strand, within ECD_03825at 4037.858 kb on - strand, within ECD_03825at 4037.933 kb on + strand, within ECD_03825at 4037.934 kb on - strand, within ECD_03825at 4037.934 kb on - strand, within ECD_03825

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,035,715 + ECD_03822 0.82 -0.1
4,035,717 + ECD_03822 0.82 +0.6
4,035,718 - ECD_03822 0.83 +0.7
4,035,721 + ECD_03822 0.83 +0.1
4,035,721 + ECD_03822 0.83 -0.9
4,035,721 + ECD_03822 0.83 +0.9
4,035,722 - ECD_03822 0.83 +0.8
4,035,722 - ECD_03822 0.83 -0.3
4,035,722 - ECD_03822 0.83 -1.0
4,035,724 + ECD_03822 0.83 +0.7
4,035,724 + ECD_03822 0.83 -0.0
4,035,724 + ECD_03822 0.83 -1.0
4,035,835 - +0.8
4,035,908 + ECD_03823 0.12 +0.2
4,035,955 + ECD_03823 0.20 +0.3
4,035,956 - ECD_03823 0.20 -0.3
4,036,063 - ECD_03823 0.38 +0.2
4,036,098 + ECD_03823 0.44 +0.0
4,036,099 - ECD_03823 0.44 +0.3
4,036,185 + ECD_03823 0.58 -2.1
4,036,185 + ECD_03823 0.58 -0.1
4,036,185 + ECD_03823 0.58 -0.3
4,036,185 + ECD_03823 0.58 -0.0
4,036,185 + ECD_03823 0.58 -0.5
4,036,185 + ECD_03823 0.58 -0.8
4,036,186 - ECD_03823 0.58 +0.3
4,036,186 - ECD_03823 0.58 +0.4
4,036,186 - ECD_03823 0.58 -1.3
4,036,186 - ECD_03823 0.58 -0.6
4,036,186 - ECD_03823 0.58 -1.0
4,036,186 - ECD_03823 0.58 +0.1
4,036,186 - ECD_03823 0.58 -0.1
4,036,231 - ECD_03823 0.65 +0.1
4,036,277 + ECD_03823 0.73 -0.4
4,036,277 + ECD_03823 0.73 +0.2
4,036,277 + ECD_03823 0.73 +0.3
4,036,301 - ECD_03823 0.77 -0.0
4,036,301 - ECD_03823 0.77 -2.8
4,036,333 + ECD_03823 0.82 +1.0
4,036,333 + ECD_03823 0.82 +0.2
4,036,400 + +0.2
4,036,441 + -0.0
4,036,441 + +1.2
4,036,442 - +0.1
4,036,442 - -0.4
4,036,442 - +0.5
4,036,445 + -0.6
4,036,445 + -1.7
4,036,446 - +0.5
4,036,457 + +1.5
4,036,457 + -0.6
4,036,458 - -1.1
4,036,458 - -0.4
4,036,459 + +0.4
4,036,460 - -1.0
4,036,569 - -0.4
4,036,627 - +1.0
4,036,629 + -1.2
4,036,629 + +1.0
4,036,630 - -0.1
4,037,020 - -0.0
4,037,020 - -1.3
4,037,081 - +0.3
4,037,081 - +0.8
4,037,083 - -0.5
4,037,095 + -0.1
4,037,095 + -2.0
4,037,096 - -0.5
4,037,118 - -0.9
4,037,171 - +1.4
4,037,227 + +0.5
4,037,252 - +0.1
4,037,276 + +1.5
4,037,276 + -0.7
4,037,277 - -0.6
4,037,315 + -1.1
4,037,316 - +1.8
4,037,316 - +0.5
4,037,332 + -1.8
4,037,332 + -0.0
4,037,527 + ECD_03825 0.27 +0.6
4,037,646 + ECD_03825 0.37 -1.9
4,037,647 - ECD_03825 0.37 -2.1
4,037,659 + ECD_03825 0.38 -0.5
4,037,738 - ECD_03825 0.45 -0.5
4,037,748 + ECD_03825 0.46 -1.8
4,037,761 - ECD_03825 0.47 -0.5
4,037,778 + ECD_03825 0.48 +0.3
4,037,778 + ECD_03825 0.48 -0.1
4,037,778 + ECD_03825 0.48 -0.6
4,037,779 - ECD_03825 0.48 -0.4
4,037,813 + ECD_03825 0.51 -0.2
4,037,814 - ECD_03825 0.51 +0.5
4,037,835 + ECD_03825 0.53 +0.5
4,037,835 + ECD_03825 0.53 -0.5
4,037,835 + ECD_03825 0.53 -0.7
4,037,836 - ECD_03825 0.53 +0.3
4,037,857 + ECD_03825 0.55 -0.4
4,037,858 - ECD_03825 0.55 +1.0
4,037,858 - ECD_03825 0.55 +0.5
4,037,933 + ECD_03825 0.61 +1.6
4,037,934 - ECD_03825 0.62 +2.2
4,037,934 - ECD_03825 0.62 +1.2

Or see this region's nucleotide sequence