Strain Fitness in Escherichia coli BL21 around ECD_03790

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03789 and ECD_03790 overlap by 4 nucleotidesECD_03790 and ECD_03791 are separated by 287 nucleotides ECD_03789: ECD_03789 - L-rhamnose isomerase, at 4,002,645 to 4,003,904 _03789 ECD_03790: ECD_03790 - rhamnulokinase, at 4,003,901 to 4,005,370 _03790 ECD_03791: ECD_03791 - transcriptional activator of rhaBAD and rhaT, at 4,005,658 to 4,006,494 _03791 Position (kb) 4003 4004 4005 4006Strain fitness (log2 ratio) -2 -1 0 1 2at 4003.069 kb on + strand, within ECD_03789at 4003.069 kb on + strand, within ECD_03789at 4003.069 kb on + strand, within ECD_03789at 4003.069 kb on + strand, within ECD_03789at 4003.070 kb on - strand, within ECD_03789at 4003.070 kb on - strand, within ECD_03789at 4003.070 kb on - strand, within ECD_03789at 4003.162 kb on + strand, within ECD_03789at 4003.171 kb on + strand, within ECD_03789at 4003.171 kb on + strand, within ECD_03789at 4003.195 kb on + strand, within ECD_03789at 4003.196 kb on - strand, within ECD_03789at 4003.272 kb on + strand, within ECD_03789at 4003.273 kb on - strand, within ECD_03789at 4003.328 kb on + strand, within ECD_03789at 4003.469 kb on + strand, within ECD_03789at 4003.469 kb on + strand, within ECD_03789at 4003.469 kb on + strand, within ECD_03789at 4003.470 kb on - strand, within ECD_03789at 4003.511 kb on + strand, within ECD_03789at 4003.612 kb on + strand, within ECD_03789at 4003.613 kb on - strand, within ECD_03789at 4003.613 kb on - strand, within ECD_03789at 4003.613 kb on - strand, within ECD_03789at 4003.624 kb on - strand, within ECD_03789at 4003.624 kb on - strand, within ECD_03789at 4003.624 kb on - strand, within ECD_03789at 4003.659 kb on - strand, within ECD_03789at 4003.659 kb on - strand, within ECD_03789at 4003.722 kb on - strand, within ECD_03789at 4003.930 kb on + strandat 4003.930 kb on + strandat 4003.931 kb on - strandat 4003.951 kb on - strandat 4003.951 kb on - strandat 4003.951 kb on - strandat 4003.951 kb on - strandat 4003.951 kb on - strandat 4003.951 kb on - strandat 4003.982 kb on - strandat 4004.058 kb on - strand, within ECD_03790at 4004.135 kb on + strand, within ECD_03790at 4004.135 kb on + strand, within ECD_03790at 4004.135 kb on + strand, within ECD_03790at 4004.135 kb on + strand, within ECD_03790at 4004.136 kb on - strand, within ECD_03790at 4004.136 kb on - strand, within ECD_03790at 4004.136 kb on - strand, within ECD_03790at 4004.136 kb on - strand, within ECD_03790at 4004.176 kb on + strand, within ECD_03790at 4004.176 kb on + strand, within ECD_03790at 4004.176 kb on + strand, within ECD_03790at 4004.177 kb on - strand, within ECD_03790at 4004.236 kb on - strand, within ECD_03790at 4004.451 kb on - strand, within ECD_03790at 4004.482 kb on + strand, within ECD_03790at 4004.557 kb on + strand, within ECD_03790at 4004.558 kb on - strand, within ECD_03790at 4004.558 kb on - strand, within ECD_03790at 4004.696 kb on - strand, within ECD_03790at 4004.720 kb on + strand, within ECD_03790at 4004.720 kb on + strand, within ECD_03790at 4004.721 kb on - strand, within ECD_03790at 4004.721 kb on - strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.845 kb on - strand, within ECD_03790at 4004.883 kb on + strand, within ECD_03790at 4004.883 kb on + strand, within ECD_03790at 4004.920 kb on + strand, within ECD_03790at 4004.920 kb on + strand, within ECD_03790at 4004.921 kb on - strand, within ECD_03790at 4004.959 kb on - strand, within ECD_03790at 4004.966 kb on - strand, within ECD_03790at 4004.992 kb on + strand, within ECD_03790at 4004.992 kb on + strand, within ECD_03790at 4004.993 kb on - strand, within ECD_03790at 4005.001 kb on - strand, within ECD_03790at 4005.001 kb on - strand, within ECD_03790at 4005.001 kb on - strand, within ECD_03790at 4005.042 kb on - strand, within ECD_03790at 4005.145 kb on + strand, within ECD_03790at 4005.180 kb on - strand, within ECD_03790at 4005.370 kb on + strandat 4005.371 kb on - strandat 4005.551 kb on - strandat 4005.601 kb on + strandat 4005.601 kb on + strandat 4005.601 kb on + strandat 4005.601 kb on + strandat 4005.622 kb on - strandat 4005.665 kb on + strandat 4005.668 kb on + strandat 4005.668 kb on + strandat 4005.668 kb on + strandat 4005.668 kb on + strandat 4005.669 kb on - strandat 4005.669 kb on - strandat 4005.672 kb on + strandat 4005.672 kb on + strandat 4005.713 kb on + strandat 4005.820 kb on + strand, within ECD_03791at 4005.822 kb on + strand, within ECD_03791at 4005.874 kb on + strand, within ECD_03791at 4005.883 kb on - strand, within ECD_03791at 4006.016 kb on + strand, within ECD_03791at 4006.017 kb on - strand, within ECD_03791at 4006.076 kb on + strand, within ECD_03791at 4006.107 kb on + strand, within ECD_03791at 4006.107 kb on + strand, within ECD_03791at 4006.108 kb on - strand, within ECD_03791at 4006.116 kb on - strand, within ECD_03791at 4006.132 kb on - strand, within ECD_03791at 4006.268 kb on + strand, within ECD_03791at 4006.269 kb on - strand, within ECD_03791at 4006.269 kb on - strand, within ECD_03791at 4006.282 kb on - strand, within ECD_03791at 4006.352 kb on + strand, within ECD_03791at 4006.352 kb on + strand, within ECD_03791at 4006.352 kb on + strand, within ECD_03791

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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4,003,069 + ECD_03789 0.34 -0.3
4,003,069 + ECD_03789 0.34 -0.3
4,003,069 + ECD_03789 0.34 -0.9
4,003,069 + ECD_03789 0.34 +0.2
4,003,070 - ECD_03789 0.34 -0.0
4,003,070 - ECD_03789 0.34 +0.7
4,003,070 - ECD_03789 0.34 -0.2
4,003,162 + ECD_03789 0.41 +0.5
4,003,171 + ECD_03789 0.42 -0.2
4,003,171 + ECD_03789 0.42 -0.7
4,003,195 + ECD_03789 0.44 +0.6
4,003,196 - ECD_03789 0.44 -1.5
4,003,272 + ECD_03789 0.50 -0.4
4,003,273 - ECD_03789 0.50 +0.3
4,003,328 + ECD_03789 0.54 +0.2
4,003,469 + ECD_03789 0.65 +0.1
4,003,469 + ECD_03789 0.65 -0.9
4,003,469 + ECD_03789 0.65 +0.9
4,003,470 - ECD_03789 0.65 -2.2
4,003,511 + ECD_03789 0.69 +0.0
4,003,612 + ECD_03789 0.77 -0.7
4,003,613 - ECD_03789 0.77 -1.9
4,003,613 - ECD_03789 0.77 +0.1
4,003,613 - ECD_03789 0.77 +0.3
4,003,624 - ECD_03789 0.78 +0.2
4,003,624 - ECD_03789 0.78 +0.5
4,003,624 - ECD_03789 0.78 +0.5
4,003,659 - ECD_03789 0.80 +0.4
4,003,659 - ECD_03789 0.80 -0.0
4,003,722 - ECD_03789 0.85 -0.5
4,003,930 + +0.6
4,003,930 + -0.1
4,003,931 - -0.5
4,003,951 - +0.4
4,003,951 - -0.6
4,003,951 - -0.4
4,003,951 - -2.5
4,003,951 - +0.2
4,003,951 - +0.1
4,003,982 - -0.1
4,004,058 - ECD_03790 0.11 -2.2
4,004,135 + ECD_03790 0.16 +0.5
4,004,135 + ECD_03790 0.16 -0.0
4,004,135 + ECD_03790 0.16 -0.0
4,004,135 + ECD_03790 0.16 +0.1
4,004,136 - ECD_03790 0.16 -0.4
4,004,136 - ECD_03790 0.16 +0.8
4,004,136 - ECD_03790 0.16 -0.6
4,004,136 - ECD_03790 0.16 -1.2
4,004,176 + ECD_03790 0.19 -0.2
4,004,176 + ECD_03790 0.19 +0.4
4,004,176 + ECD_03790 0.19 -0.1
4,004,177 - ECD_03790 0.19 -0.8
4,004,236 - ECD_03790 0.23 +0.1
4,004,451 - ECD_03790 0.37 +0.2
4,004,482 + ECD_03790 0.40 +0.0
4,004,557 + ECD_03790 0.45 -0.2
4,004,558 - ECD_03790 0.45 -0.1
4,004,558 - ECD_03790 0.45 -1.2
4,004,696 - ECD_03790 0.54 +0.1
4,004,720 + ECD_03790 0.56 -0.6
4,004,720 + ECD_03790 0.56 -0.7
4,004,721 - ECD_03790 0.56 +0.2
4,004,721 - ECD_03790 0.56 +0.2
4,004,842 + ECD_03790 0.64 +1.0
4,004,842 + ECD_03790 0.64 +0.2
4,004,842 + ECD_03790 0.64 +0.3
4,004,842 + ECD_03790 0.64 -2.2
4,004,843 - ECD_03790 0.64 +0.2
4,004,843 - ECD_03790 0.64 -0.4
4,004,843 - ECD_03790 0.64 -0.3
4,004,843 - ECD_03790 0.64 -0.7
4,004,843 - ECD_03790 0.64 -0.6
4,004,845 - ECD_03790 0.64 -0.2
4,004,883 + ECD_03790 0.67 -0.0
4,004,883 + ECD_03790 0.67 -0.8
4,004,920 + ECD_03790 0.69 +0.4
4,004,920 + ECD_03790 0.69 +0.5
4,004,921 - ECD_03790 0.69 -0.6
4,004,959 - ECD_03790 0.72 -0.6
4,004,966 - ECD_03790 0.72 +0.4
4,004,992 + ECD_03790 0.74 +0.7
4,004,992 + ECD_03790 0.74 +1.5
4,004,993 - ECD_03790 0.74 -1.0
4,005,001 - ECD_03790 0.75 +0.0
4,005,001 - ECD_03790 0.75 +0.6
4,005,001 - ECD_03790 0.75 +0.1
4,005,042 - ECD_03790 0.78 +0.3
4,005,145 + ECD_03790 0.85 -0.0
4,005,180 - ECD_03790 0.87 +0.4
4,005,370 + -2.1
4,005,371 - +0.6
4,005,551 - -2.1
4,005,601 + +0.1
4,005,601 + -0.3
4,005,601 + +0.7
4,005,601 + -0.6
4,005,622 - +0.2
4,005,665 + -0.3
4,005,668 + +2.1
4,005,668 + -1.7
4,005,668 + -1.5
4,005,668 + +0.4
4,005,669 - +0.0
4,005,669 - -0.7
4,005,672 + +0.4
4,005,672 + -0.0
4,005,713 + +0.4
4,005,820 + ECD_03791 0.19 +0.4
4,005,822 + ECD_03791 0.20 +0.1
4,005,874 + ECD_03791 0.26 -0.4
4,005,883 - ECD_03791 0.27 -0.4
4,006,016 + ECD_03791 0.43 +0.7
4,006,017 - ECD_03791 0.43 -0.5
4,006,076 + ECD_03791 0.50 +0.5
4,006,107 + ECD_03791 0.54 +0.5
4,006,107 + ECD_03791 0.54 +0.1
4,006,108 - ECD_03791 0.54 +1.1
4,006,116 - ECD_03791 0.55 -0.1
4,006,132 - ECD_03791 0.57 +0.5
4,006,268 + ECD_03791 0.73 -0.2
4,006,269 - ECD_03791 0.73 -0.8
4,006,269 - ECD_03791 0.73 -0.4
4,006,282 - ECD_03791 0.75 -0.2
4,006,352 + ECD_03791 0.83 +0.4
4,006,352 + ECD_03791 0.83 +0.5
4,006,352 + ECD_03791 0.83 -0.0

Or see this region's nucleotide sequence