Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03789 and ECD_03790 overlap by 4 nucleotides ECD_03790 and ECD_03791 are separated by 287 nucleotides
ECD_03789: ECD_03789 - L-rhamnose isomerase, at 4,002,645 to 4,003,904
_03789
ECD_03790: ECD_03790 - rhamnulokinase, at 4,003,901 to 4,005,370
_03790
ECD_03791: ECD_03791 - transcriptional activator of rhaBAD and rhaT, at 4,005,658 to 4,006,494
_03791
Position (kb)
4003
4004
4005
4006 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4003.069 kb on + strand, within ECD_03789 at 4003.069 kb on + strand, within ECD_03789 at 4003.069 kb on + strand, within ECD_03789 at 4003.069 kb on + strand, within ECD_03789 at 4003.070 kb on - strand, within ECD_03789 at 4003.070 kb on - strand, within ECD_03789 at 4003.070 kb on - strand, within ECD_03789 at 4003.162 kb on + strand, within ECD_03789 at 4003.171 kb on + strand, within ECD_03789 at 4003.171 kb on + strand, within ECD_03789 at 4003.195 kb on + strand, within ECD_03789 at 4003.196 kb on - strand, within ECD_03789 at 4003.272 kb on + strand, within ECD_03789 at 4003.273 kb on - strand, within ECD_03789 at 4003.328 kb on + strand, within ECD_03789 at 4003.469 kb on + strand, within ECD_03789 at 4003.469 kb on + strand, within ECD_03789 at 4003.469 kb on + strand, within ECD_03789 at 4003.470 kb on - strand, within ECD_03789 at 4003.511 kb on + strand, within ECD_03789 at 4003.612 kb on + strand, within ECD_03789 at 4003.613 kb on - strand, within ECD_03789 at 4003.613 kb on - strand, within ECD_03789 at 4003.613 kb on - strand, within ECD_03789 at 4003.624 kb on - strand, within ECD_03789 at 4003.624 kb on - strand, within ECD_03789 at 4003.624 kb on - strand, within ECD_03789 at 4003.659 kb on - strand, within ECD_03789 at 4003.659 kb on - strand, within ECD_03789 at 4003.722 kb on - strand, within ECD_03789 at 4003.930 kb on + strand at 4003.930 kb on + strand at 4003.931 kb on - strand at 4003.951 kb on - strand at 4003.951 kb on - strand at 4003.951 kb on - strand at 4003.951 kb on - strand at 4003.951 kb on - strand at 4003.951 kb on - strand at 4003.982 kb on - strand at 4004.058 kb on - strand, within ECD_03790 at 4004.135 kb on + strand, within ECD_03790 at 4004.135 kb on + strand, within ECD_03790 at 4004.135 kb on + strand, within ECD_03790 at 4004.135 kb on + strand, within ECD_03790 at 4004.136 kb on - strand, within ECD_03790 at 4004.136 kb on - strand, within ECD_03790 at 4004.136 kb on - strand, within ECD_03790 at 4004.136 kb on - strand, within ECD_03790 at 4004.176 kb on + strand, within ECD_03790 at 4004.176 kb on + strand, within ECD_03790 at 4004.176 kb on + strand, within ECD_03790 at 4004.177 kb on - strand, within ECD_03790 at 4004.236 kb on - strand, within ECD_03790 at 4004.451 kb on - strand, within ECD_03790 at 4004.482 kb on + strand, within ECD_03790 at 4004.557 kb on + strand, within ECD_03790 at 4004.558 kb on - strand, within ECD_03790 at 4004.558 kb on - strand, within ECD_03790 at 4004.696 kb on - strand, within ECD_03790 at 4004.720 kb on + strand, within ECD_03790 at 4004.720 kb on + strand, within ECD_03790 at 4004.721 kb on - strand, within ECD_03790 at 4004.721 kb on - strand, within ECD_03790 at 4004.842 kb on + strand, within ECD_03790 at 4004.842 kb on + strand, within ECD_03790 at 4004.842 kb on + strand, within ECD_03790 at 4004.842 kb on + strand, within ECD_03790 at 4004.843 kb on - strand, within ECD_03790 at 4004.843 kb on - strand, within ECD_03790 at 4004.843 kb on - strand, within ECD_03790 at 4004.843 kb on - strand, within ECD_03790 at 4004.843 kb on - strand, within ECD_03790 at 4004.845 kb on - strand, within ECD_03790 at 4004.883 kb on + strand, within ECD_03790 at 4004.883 kb on + strand, within ECD_03790 at 4004.920 kb on + strand, within ECD_03790 at 4004.920 kb on + strand, within ECD_03790 at 4004.921 kb on - strand, within ECD_03790 at 4004.959 kb on - strand, within ECD_03790 at 4004.966 kb on - strand, within ECD_03790 at 4004.992 kb on + strand, within ECD_03790 at 4004.992 kb on + strand, within ECD_03790 at 4004.993 kb on - strand, within ECD_03790 at 4005.001 kb on - strand, within ECD_03790 at 4005.001 kb on - strand, within ECD_03790 at 4005.001 kb on - strand, within ECD_03790 at 4005.042 kb on - strand, within ECD_03790 at 4005.145 kb on + strand, within ECD_03790 at 4005.180 kb on - strand, within ECD_03790 at 4005.370 kb on + strand at 4005.371 kb on - strand at 4005.551 kb on - strand at 4005.601 kb on + strand at 4005.601 kb on + strand at 4005.601 kb on + strand at 4005.601 kb on + strand at 4005.622 kb on - strand at 4005.665 kb on + strand at 4005.668 kb on + strand at 4005.668 kb on + strand at 4005.668 kb on + strand at 4005.668 kb on + strand at 4005.669 kb on - strand at 4005.669 kb on - strand at 4005.672 kb on + strand at 4005.672 kb on + strand at 4005.713 kb on + strand at 4005.820 kb on + strand, within ECD_03791 at 4005.822 kb on + strand, within ECD_03791 at 4005.874 kb on + strand, within ECD_03791 at 4005.883 kb on - strand, within ECD_03791 at 4006.016 kb on + strand, within ECD_03791 at 4006.017 kb on - strand, within ECD_03791 at 4006.076 kb on + strand, within ECD_03791 at 4006.107 kb on + strand, within ECD_03791 at 4006.107 kb on + strand, within ECD_03791 at 4006.108 kb on - strand, within ECD_03791 at 4006.116 kb on - strand, within ECD_03791 at 4006.132 kb on - strand, within ECD_03791 at 4006.268 kb on + strand, within ECD_03791 at 4006.269 kb on - strand, within ECD_03791 at 4006.269 kb on - strand, within ECD_03791 at 4006.282 kb on - strand, within ECD_03791 at 4006.352 kb on + strand, within ECD_03791 at 4006.352 kb on + strand, within ECD_03791 at 4006.352 kb on + strand, within ECD_03791
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 4,003,069 + ECD_03789 0.34 -0.3 4,003,069 + ECD_03789 0.34 -0.3 4,003,069 + ECD_03789 0.34 -0.9 4,003,069 + ECD_03789 0.34 +0.2 4,003,070 - ECD_03789 0.34 -0.0 4,003,070 - ECD_03789 0.34 +0.7 4,003,070 - ECD_03789 0.34 -0.2 4,003,162 + ECD_03789 0.41 +0.5 4,003,171 + ECD_03789 0.42 -0.2 4,003,171 + ECD_03789 0.42 -0.7 4,003,195 + ECD_03789 0.44 +0.6 4,003,196 - ECD_03789 0.44 -1.5 4,003,272 + ECD_03789 0.50 -0.4 4,003,273 - ECD_03789 0.50 +0.3 4,003,328 + ECD_03789 0.54 +0.2 4,003,469 + ECD_03789 0.65 +0.1 4,003,469 + ECD_03789 0.65 -0.9 4,003,469 + ECD_03789 0.65 +0.9 4,003,470 - ECD_03789 0.65 -2.2 4,003,511 + ECD_03789 0.69 +0.0 4,003,612 + ECD_03789 0.77 -0.7 4,003,613 - ECD_03789 0.77 -1.9 4,003,613 - ECD_03789 0.77 +0.1 4,003,613 - ECD_03789 0.77 +0.3 4,003,624 - ECD_03789 0.78 +0.2 4,003,624 - ECD_03789 0.78 +0.5 4,003,624 - ECD_03789 0.78 +0.5 4,003,659 - ECD_03789 0.80 +0.4 4,003,659 - ECD_03789 0.80 -0.0 4,003,722 - ECD_03789 0.85 -0.5 4,003,930 + +0.6 4,003,930 + -0.1 4,003,931 - -0.5 4,003,951 - +0.4 4,003,951 - -0.6 4,003,951 - -0.4 4,003,951 - -2.5 4,003,951 - +0.2 4,003,951 - +0.1 4,003,982 - -0.1 4,004,058 - ECD_03790 0.11 -2.2 4,004,135 + ECD_03790 0.16 +0.5 4,004,135 + ECD_03790 0.16 -0.0 4,004,135 + ECD_03790 0.16 -0.0 4,004,135 + ECD_03790 0.16 +0.1 4,004,136 - ECD_03790 0.16 -0.4 4,004,136 - ECD_03790 0.16 +0.8 4,004,136 - ECD_03790 0.16 -0.6 4,004,136 - ECD_03790 0.16 -1.2 4,004,176 + ECD_03790 0.19 -0.2 4,004,176 + ECD_03790 0.19 +0.4 4,004,176 + ECD_03790 0.19 -0.1 4,004,177 - ECD_03790 0.19 -0.8 4,004,236 - ECD_03790 0.23 +0.1 4,004,451 - ECD_03790 0.37 +0.2 4,004,482 + ECD_03790 0.40 +0.0 4,004,557 + ECD_03790 0.45 -0.2 4,004,558 - ECD_03790 0.45 -0.1 4,004,558 - ECD_03790 0.45 -1.2 4,004,696 - ECD_03790 0.54 +0.1 4,004,720 + ECD_03790 0.56 -0.6 4,004,720 + ECD_03790 0.56 -0.7 4,004,721 - ECD_03790 0.56 +0.2 4,004,721 - ECD_03790 0.56 +0.2 4,004,842 + ECD_03790 0.64 +1.0 4,004,842 + ECD_03790 0.64 +0.2 4,004,842 + ECD_03790 0.64 +0.3 4,004,842 + ECD_03790 0.64 -2.2 4,004,843 - ECD_03790 0.64 +0.2 4,004,843 - ECD_03790 0.64 -0.4 4,004,843 - ECD_03790 0.64 -0.3 4,004,843 - ECD_03790 0.64 -0.7 4,004,843 - ECD_03790 0.64 -0.6 4,004,845 - ECD_03790 0.64 -0.2 4,004,883 + ECD_03790 0.67 -0.0 4,004,883 + ECD_03790 0.67 -0.8 4,004,920 + ECD_03790 0.69 +0.4 4,004,920 + ECD_03790 0.69 +0.5 4,004,921 - ECD_03790 0.69 -0.6 4,004,959 - ECD_03790 0.72 -0.6 4,004,966 - ECD_03790 0.72 +0.4 4,004,992 + ECD_03790 0.74 +0.7 4,004,992 + ECD_03790 0.74 +1.5 4,004,993 - ECD_03790 0.74 -1.0 4,005,001 - ECD_03790 0.75 +0.0 4,005,001 - ECD_03790 0.75 +0.6 4,005,001 - ECD_03790 0.75 +0.1 4,005,042 - ECD_03790 0.78 +0.3 4,005,145 + ECD_03790 0.85 -0.0 4,005,180 - ECD_03790 0.87 +0.4 4,005,370 + -2.1 4,005,371 - +0.6 4,005,551 - -2.1 4,005,601 + +0.1 4,005,601 + -0.3 4,005,601 + +0.7 4,005,601 + -0.6 4,005,622 - +0.2 4,005,665 + -0.3 4,005,668 + +2.1 4,005,668 + -1.7 4,005,668 + -1.5 4,005,668 + +0.4 4,005,669 - +0.0 4,005,669 - -0.7 4,005,672 + +0.4 4,005,672 + -0.0 4,005,713 + +0.4 4,005,820 + ECD_03791 0.19 +0.4 4,005,822 + ECD_03791 0.20 +0.1 4,005,874 + ECD_03791 0.26 -0.4 4,005,883 - ECD_03791 0.27 -0.4 4,006,016 + ECD_03791 0.43 +0.7 4,006,017 - ECD_03791 0.43 -0.5 4,006,076 + ECD_03791 0.50 +0.5 4,006,107 + ECD_03791 0.54 +0.5 4,006,107 + ECD_03791 0.54 +0.1 4,006,108 - ECD_03791 0.54 +1.1 4,006,116 - ECD_03791 0.55 -0.1 4,006,132 - ECD_03791 0.57 +0.5 4,006,268 + ECD_03791 0.73 -0.2 4,006,269 - ECD_03791 0.73 -0.8 4,006,269 - ECD_03791 0.73 -0.4 4,006,282 - ECD_03791 0.75 -0.2 4,006,352 + ECD_03791 0.83 +0.4 4,006,352 + ECD_03791 0.83 +0.5 4,006,352 + ECD_03791 0.83 -0.0
Or see this region's nucleotide sequence