Strain Fitness in Escherichia coli BL21 around ECD_03086

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03085 and ECD_03086 are separated by 121 nucleotidesECD_03086 and ECD_03087 are separated by 379 nucleotides ECD_03085: ECD_03085 - N-acetylneuraminate lyase, at 3,233,846 to 3,234,739 _03085 ECD_03086: ECD_03086 - sialic acid-inducible nan operon repressor, at 3,234,861 to 3,235,652 _03086 ECD_03087: ECD_03087 - putative transporter, at 3,236,032 to 3,237,399 _03087 Position (kb) 3234 3235 3236Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3233.957 kb on - strand, within ECD_03085at 3233.959 kb on - strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.111 kb on + strand, within ECD_03085at 3234.178 kb on + strand, within ECD_03085at 3234.180 kb on + strand, within ECD_03085at 3234.257 kb on + strand, within ECD_03085at 3234.258 kb on - strand, within ECD_03085at 3234.271 kb on + strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.272 kb on - strand, within ECD_03085at 3234.330 kb on + strand, within ECD_03085at 3234.330 kb on + strand, within ECD_03085at 3234.365 kb on - strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.411 kb on + strand, within ECD_03085at 3234.412 kb on - strand, within ECD_03085at 3234.412 kb on - strand, within ECD_03085at 3234.581 kb on + strand, within ECD_03085at 3234.612 kb on + strand, within ECD_03085at 3234.612 kb on + strand, within ECD_03085at 3234.613 kb on - strand, within ECD_03085at 3234.615 kb on - strand, within ECD_03085at 3234.744 kb on - strandat 3234.744 kb on - strandat 3234.831 kb on + strandat 3234.832 kb on - strandat 3234.833 kb on + strandat 3234.851 kb on + strandat 3234.986 kb on + strand, within ECD_03086at 3234.998 kb on - strand, within ECD_03086at 3235.001 kb on + strand, within ECD_03086at 3235.272 kb on + strand, within ECD_03086at 3235.272 kb on + strand, within ECD_03086at 3235.273 kb on - strand, within ECD_03086at 3235.347 kb on - strand, within ECD_03086at 3235.393 kb on - strand, within ECD_03086at 3235.489 kb on - strand, within ECD_03086at 3235.489 kb on - strand, within ECD_03086at 3235.771 kb on - strandat 3235.950 kb on - strandat 3236.043 kb on - strandat 3236.046 kb on + strandat 3236.127 kb on + strandat 3236.128 kb on - strandat 3236.157 kb on - strandat 3236.197 kb on + strand, within ECD_03087at 3236.211 kb on + strand, within ECD_03087at 3236.215 kb on + strand, within ECD_03087at 3236.215 kb on + strand, within ECD_03087at 3236.217 kb on + strand, within ECD_03087at 3236.296 kb on + strand, within ECD_03087at 3236.340 kb on - strand, within ECD_03087at 3236.373 kb on + strand, within ECD_03087at 3236.377 kb on - strand, within ECD_03087at 3236.392 kb on + strand, within ECD_03087at 3236.393 kb on - strand, within ECD_03087at 3236.393 kb on - strand, within ECD_03087at 3236.393 kb on - strand, within ECD_03087at 3236.421 kb on + strand, within ECD_03087at 3236.446 kb on - strand, within ECD_03087at 3236.466 kb on - strand, within ECD_03087at 3236.492 kb on + strand, within ECD_03087at 3236.493 kb on - strand, within ECD_03087at 3236.605 kb on + strand, within ECD_03087at 3236.605 kb on + strand, within ECD_03087at 3236.605 kb on + strand, within ECD_03087at 3236.605 kb on + strand, within ECD_03087at 3236.606 kb on - strand, within ECD_03087at 3236.606 kb on - strand, within ECD_03087at 3236.606 kb on - strand, within ECD_03087at 3236.606 kb on - strand, within ECD_03087at 3236.646 kb on + strand, within ECD_03087

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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3,233,957 - ECD_03085 0.12 +1.1
3,233,959 - ECD_03085 0.13 +1.1
3,234,111 + ECD_03085 0.30 +1.3
3,234,111 + ECD_03085 0.30 -0.5
3,234,111 + ECD_03085 0.30 +0.6
3,234,178 + ECD_03085 0.37 -0.0
3,234,180 + ECD_03085 0.37 -0.0
3,234,257 + ECD_03085 0.46 -0.9
3,234,258 - ECD_03085 0.46 -1.1
3,234,271 + ECD_03085 0.48 -1.2
3,234,272 - ECD_03085 0.48 -0.1
3,234,272 - ECD_03085 0.48 +1.4
3,234,272 - ECD_03085 0.48 -1.2
3,234,330 + ECD_03085 0.54 -0.2
3,234,330 + ECD_03085 0.54 +0.7
3,234,365 - ECD_03085 0.58 +0.6
3,234,411 + ECD_03085 0.63 -0.7
3,234,411 + ECD_03085 0.63 +0.3
3,234,411 + ECD_03085 0.63 +0.0
3,234,412 - ECD_03085 0.63 +0.3
3,234,412 - ECD_03085 0.63 -0.0
3,234,581 + ECD_03085 0.82 -1.3
3,234,612 + ECD_03085 0.86 +0.1
3,234,612 + ECD_03085 0.86 -1.2
3,234,613 - ECD_03085 0.86 -0.7
3,234,615 - ECD_03085 0.86 -0.6
3,234,744 - +0.5
3,234,744 - +0.4
3,234,831 + +0.2
3,234,832 - -1.1
3,234,833 + +0.5
3,234,851 + +0.6
3,234,986 + ECD_03086 0.16 +1.9
3,234,998 - ECD_03086 0.17 +1.9
3,235,001 + ECD_03086 0.18 +1.2
3,235,272 + ECD_03086 0.52 +1.5
3,235,272 + ECD_03086 0.52 +3.3
3,235,273 - ECD_03086 0.52 +2.0
3,235,347 - ECD_03086 0.61 +2.2
3,235,393 - ECD_03086 0.67 +1.3
3,235,489 - ECD_03086 0.79 +1.7
3,235,489 - ECD_03086 0.79 -0.2
3,235,771 - +0.2
3,235,950 - +2.0
3,236,043 - -0.6
3,236,046 + +0.2
3,236,127 + -1.6
3,236,128 - -0.1
3,236,157 - -0.1
3,236,197 + ECD_03087 0.12 +1.4
3,236,211 + ECD_03087 0.13 +0.2
3,236,215 + ECD_03087 0.13 -0.0
3,236,215 + ECD_03087 0.13 -0.0
3,236,217 + ECD_03087 0.14 -1.1
3,236,296 + ECD_03087 0.19 -0.2
3,236,340 - ECD_03087 0.23 +1.1
3,236,373 + ECD_03087 0.25 -0.9
3,236,377 - ECD_03087 0.25 +0.9
3,236,392 + ECD_03087 0.26 -0.1
3,236,393 - ECD_03087 0.26 -0.9
3,236,393 - ECD_03087 0.26 +0.4
3,236,393 - ECD_03087 0.26 +0.3
3,236,421 + ECD_03087 0.28 -2.3
3,236,446 - ECD_03087 0.30 -1.3
3,236,466 - ECD_03087 0.32 +1.5
3,236,492 + ECD_03087 0.34 -0.6
3,236,493 - ECD_03087 0.34 +0.8
3,236,605 + ECD_03087 0.42 +0.1
3,236,605 + ECD_03087 0.42 -0.1
3,236,605 + ECD_03087 0.42 +0.7
3,236,605 + ECD_03087 0.42 -0.7
3,236,606 - ECD_03087 0.42 -0.6
3,236,606 - ECD_03087 0.42 -1.0
3,236,606 - ECD_03087 0.42 +1.2
3,236,606 - ECD_03087 0.42 +1.0
3,236,646 + ECD_03087 0.45 +0.6

Or see this region's nucleotide sequence