Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03062 and ECD_03063 are separated by 20 nucleotides ECD_03063 and ECD_03064 overlap by 4 nucleotides ECD_03064 and ECD_03065 overlap by 32 nucleotides ECD_03065 and ECD_03066 are separated by 6 nucleotides
ECD_03062: ECD_03062 - D-arabinose 5-phosphate isomerase, at 3,209,766 to 3,210,752
_03062
ECD_03063: ECD_03063 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 3,210,773 to 3,211,339
_03063
ECD_03064: ECD_03064 - periplasmic membrane-anchored LPS-binding protein; LPS export protein, at 3,211,336 to 3,211,911
_03064
ECD_03065: ECD_03065 - lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein, at 3,211,880 to 3,212,437
_03065
ECD_03066: ECD_03066 - lipopolysaccharide export ABC transporter ATPase, at 3,212,444 to 3,213,169
_03066
Position (kb)
3211
3212 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3210.392 kb on + strand, within ECD_03062 at 3210.392 kb on + strand, within ECD_03062 at 3210.393 kb on - strand, within ECD_03062 at 3210.422 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.503 kb on + strand, within ECD_03062 at 3210.577 kb on + strand, within ECD_03062 at 3210.577 kb on + strand, within ECD_03062 at 3210.610 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.652 kb on + strand, within ECD_03062 at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.715 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.719 kb on + strand at 3210.730 kb on + strand at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3210.899 kb on + strand, within ECD_03063 at 3211.058 kb on + strand, within ECD_03063 at 3211.136 kb on + strand, within ECD_03063 at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.287 kb on + strand at 3211.764 kb on + strand, within ECD_03064 at 3211.764 kb on + strand, within ECD_03064 at 3211.787 kb on + strand, within ECD_03064 at 3211.789 kb on + strand, within ECD_03064
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 3,210,392 + ECD_03062 0.63 +0.3 3,210,392 + ECD_03062 0.63 +2.6 3,210,393 - ECD_03062 0.64 -0.6 3,210,422 + ECD_03062 0.66 +0.0 3,210,503 + ECD_03062 0.75 -1.2 3,210,503 + ECD_03062 0.75 -0.7 3,210,503 + ECD_03062 0.75 +1.6 3,210,503 + ECD_03062 0.75 -0.9 3,210,577 + ECD_03062 0.82 -0.2 3,210,577 + ECD_03062 0.82 -1.5 3,210,610 + ECD_03062 0.86 +0.3 3,210,652 + ECD_03062 0.90 -0.1 3,210,652 + ECD_03062 0.90 -2.1 3,210,652 + ECD_03062 0.90 -0.3 3,210,715 + +0.2 3,210,715 + -0.1 3,210,715 + -0.2 3,210,715 + +0.4 3,210,715 + -0.0 3,210,715 + +0.3 3,210,715 + -1.6 3,210,715 + -1.4 3,210,719 + +0.4 3,210,719 + -0.0 3,210,719 + -0.5 3,210,719 + -0.5 3,210,719 + -0.4 3,210,719 + -0.5 3,210,719 + -0.2 3,210,719 + +0.6 3,210,719 + -0.0 3,210,719 + +0.7 3,210,719 + -0.3 3,210,719 + +0.3 3,210,719 + -1.0 3,210,719 + -0.1 3,210,730 + +0.5 3,210,899 + ECD_03063 0.22 +2.0 3,210,899 + ECD_03063 0.22 +1.9 3,210,899 + ECD_03063 0.22 +1.7 3,210,899 + ECD_03063 0.22 +1.8 3,211,058 + ECD_03063 0.50 +1.7 3,211,136 + ECD_03063 0.64 +1.3 3,211,287 + +1.6 3,211,287 + +2.2 3,211,287 + +0.8 3,211,287 + +0.7 3,211,287 + +1.6 3,211,764 + ECD_03064 0.74 +0.2 3,211,764 + ECD_03064 0.74 -1.7 3,211,787 + ECD_03064 0.78 +0.1 3,211,789 + ECD_03064 0.79 +0.1
Or see this region's nucleotide sequence