Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02749 and ECD_02750 are separated by 10 nucleotides ECD_02750 and ECD_02751 are separated by 23 nucleotides ECD_02751 and ECD_02752 overlap by 4 nucleotides
ECD_02749: ECD_02749 - membrane ATPase/protein kinase, at 2,893,845 to 2,894,840
_02749
ECD_02750: ECD_02750 - methylmalonyl-CoA decarboxylase, biotin-independent, at 2,894,851 to 2,895,636
_02750
ECD_02751: ECD_02751 - propionyl-CoA:succinate CoA transferase, at 2,895,660 to 2,897,138
_02751
ECD_02752: ECD_02752 - putative DNA-binding transcriptional regulator, at 2,897,135 to 2,898,031
_02752
Position (kb)
2895
2896
2897
2898 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2894.681 kb on + strand, within ECD_02749 at 2894.701 kb on + strand, within ECD_02749 at 2894.701 kb on + strand, within ECD_02749 at 2894.701 kb on + strand, within ECD_02749 at 2894.701 kb on + strand, within ECD_02749 at 2894.701 kb on + strand, within ECD_02749 at 2894.739 kb on + strand, within ECD_02749 at 2894.774 kb on + strand at 2894.933 kb on + strand, within ECD_02750 at 2895.000 kb on + strand, within ECD_02750 at 2895.051 kb on + strand, within ECD_02750 at 2895.091 kb on + strand, within ECD_02750 at 2895.091 kb on + strand, within ECD_02750 at 2895.091 kb on + strand, within ECD_02750 at 2895.092 kb on - strand, within ECD_02750 at 2895.092 kb on - strand, within ECD_02750 at 2895.092 kb on - strand, within ECD_02750 at 2895.166 kb on - strand, within ECD_02750 at 2895.269 kb on - strand, within ECD_02750 at 2895.336 kb on + strand, within ECD_02750 at 2895.425 kb on + strand, within ECD_02750 at 2895.495 kb on - strand, within ECD_02750 at 2895.495 kb on - strand, within ECD_02750 at 2895.537 kb on + strand, within ECD_02750 at 2895.562 kb on + strand at 2895.562 kb on + strand at 2895.613 kb on - strand at 2895.716 kb on + strand at 2895.769 kb on + strand at 2895.874 kb on + strand, within ECD_02751 at 2895.874 kb on + strand, within ECD_02751 at 2895.936 kb on - strand, within ECD_02751 at 2896.005 kb on + strand, within ECD_02751 at 2896.005 kb on + strand, within ECD_02751 at 2896.006 kb on - strand, within ECD_02751 at 2896.149 kb on + strand, within ECD_02751 at 2896.181 kb on + strand, within ECD_02751 at 2896.257 kb on + strand, within ECD_02751 at 2896.322 kb on + strand, within ECD_02751 at 2896.322 kb on + strand, within ECD_02751 at 2896.322 kb on + strand, within ECD_02751 at 2896.323 kb on - strand, within ECD_02751 at 2896.323 kb on - strand, within ECD_02751 at 2896.323 kb on - strand, within ECD_02751 at 2896.381 kb on + strand, within ECD_02751 at 2896.382 kb on - strand, within ECD_02751 at 2896.382 kb on - strand, within ECD_02751 at 2896.454 kb on + strand, within ECD_02751 at 2896.502 kb on + strand, within ECD_02751 at 2896.509 kb on + strand, within ECD_02751 at 2896.509 kb on + strand, within ECD_02751 at 2896.509 kb on + strand, within ECD_02751 at 2896.510 kb on - strand, within ECD_02751 at 2896.522 kb on + strand, within ECD_02751 at 2896.522 kb on + strand, within ECD_02751 at 2896.544 kb on - strand, within ECD_02751 at 2896.626 kb on - strand, within ECD_02751 at 2896.737 kb on - strand, within ECD_02751 at 2896.824 kb on + strand, within ECD_02751 at 2896.824 kb on + strand, within ECD_02751 at 2896.825 kb on - strand, within ECD_02751 at 2896.838 kb on + strand, within ECD_02751 at 2896.856 kb on + strand, within ECD_02751 at 2896.856 kb on + strand, within ECD_02751 at 2896.992 kb on - strand at 2896.992 kb on - strand at 2897.000 kb on + strand at 2897.001 kb on - strand at 2897.001 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.016 kb on - strand at 2897.019 kb on + strand at 2897.040 kb on + strand at 2897.066 kb on + strand at 2897.066 kb on + strand at 2897.067 kb on - strand at 2897.099 kb on - strand at 2897.099 kb on - strand at 2897.167 kb on + strand at 2897.167 kb on + strand at 2897.189 kb on - strand at 2897.189 kb on - strand at 2897.189 kb on - strand at 2897.189 kb on - strand at 2897.211 kb on + strand at 2897.227 kb on + strand, within ECD_02752 at 2897.227 kb on + strand, within ECD_02752 at 2897.229 kb on + strand, within ECD_02752 at 2897.229 kb on + strand, within ECD_02752 at 2897.229 kb on + strand, within ECD_02752 at 2897.229 kb on + strand, within ECD_02752 at 2897.229 kb on + strand, within ECD_02752 at 2897.230 kb on - strand, within ECD_02752 at 2897.230 kb on - strand, within ECD_02752 at 2897.230 kb on - strand, within ECD_02752 at 2897.230 kb on - strand, within ECD_02752 at 2897.348 kb on - strand, within ECD_02752 at 2897.365 kb on - strand, within ECD_02752 at 2897.368 kb on + strand, within ECD_02752 at 2897.451 kb on - strand, within ECD_02752 at 2897.497 kb on - strand, within ECD_02752 at 2897.534 kb on + strand, within ECD_02752 at 2897.535 kb on - strand, within ECD_02752 at 2897.535 kb on - strand, within ECD_02752 at 2897.546 kb on - strand, within ECD_02752 at 2897.579 kb on + strand, within ECD_02752 at 2897.596 kb on + strand, within ECD_02752 at 2897.597 kb on - strand, within ECD_02752 at 2897.597 kb on - strand, within ECD_02752 at 2897.679 kb on + strand, within ECD_02752 at 2897.680 kb on - strand, within ECD_02752 at 2897.683 kb on + strand, within ECD_02752 at 2897.684 kb on - strand, within ECD_02752 at 2897.713 kb on + strand, within ECD_02752 at 2897.728 kb on + strand, within ECD_02752 at 2897.728 kb on + strand, within ECD_02752 at 2897.728 kb on + strand, within ECD_02752 at 2897.729 kb on - strand, within ECD_02752 at 2897.729 kb on - strand, within ECD_02752 at 2897.731 kb on + strand, within ECD_02752 at 2897.731 kb on + strand, within ECD_02752 at 2897.732 kb on - strand, within ECD_02752 at 2897.732 kb on - strand, within ECD_02752 at 2897.735 kb on + strand, within ECD_02752 at 2897.773 kb on + strand, within ECD_02752 at 2897.882 kb on + strand, within ECD_02752 at 2897.887 kb on + strand, within ECD_02752 at 2897.888 kb on - strand, within ECD_02752 at 2897.990 kb on + strand at 2898.076 kb on + strand at 2898.103 kb on + strand at 2898.103 kb on + strand at 2898.104 kb on - strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.111 kb on + strand at 2898.112 kb on - strand at 2898.112 kb on - strand at 2898.112 kb on - strand at 2898.112 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 2,894,681 + ECD_02749 0.84 +0.4 2,894,701 + ECD_02749 0.86 +0.1 2,894,701 + ECD_02749 0.86 +0.5 2,894,701 + ECD_02749 0.86 -0.3 2,894,701 + ECD_02749 0.86 +1.9 2,894,701 + ECD_02749 0.86 -0.4 2,894,739 + ECD_02749 0.90 -1.2 2,894,774 + +0.5 2,894,933 + ECD_02750 0.10 +2.2 2,895,000 + ECD_02750 0.19 -1.5 2,895,051 + ECD_02750 0.25 +1.3 2,895,091 + ECD_02750 0.31 -0.9 2,895,091 + ECD_02750 0.31 +1.0 2,895,091 + ECD_02750 0.31 -1.5 2,895,092 - ECD_02750 0.31 +0.9 2,895,092 - ECD_02750 0.31 -0.4 2,895,092 - ECD_02750 0.31 +1.4 2,895,166 - ECD_02750 0.40 -0.0 2,895,269 - ECD_02750 0.53 -1.4 2,895,336 + ECD_02750 0.62 -2.8 2,895,425 + ECD_02750 0.73 +0.1 2,895,495 - ECD_02750 0.82 +0.8 2,895,495 - ECD_02750 0.82 +1.0 2,895,537 + ECD_02750 0.87 -0.3 2,895,562 + +0.1 2,895,562 + -3.2 2,895,613 - -0.3 2,895,716 + -1.4 2,895,769 + -0.2 2,895,874 + ECD_02751 0.14 -0.1 2,895,874 + ECD_02751 0.14 +0.3 2,895,936 - ECD_02751 0.19 +1.8 2,896,005 + ECD_02751 0.23 +0.6 2,896,005 + ECD_02751 0.23 +1.2 2,896,006 - ECD_02751 0.23 -0.9 2,896,149 + ECD_02751 0.33 -1.5 2,896,181 + ECD_02751 0.35 +0.7 2,896,257 + ECD_02751 0.40 +1.4 2,896,322 + ECD_02751 0.45 -0.2 2,896,322 + ECD_02751 0.45 +0.0 2,896,322 + ECD_02751 0.45 -0.2 2,896,323 - ECD_02751 0.45 +1.1 2,896,323 - ECD_02751 0.45 +0.9 2,896,323 - ECD_02751 0.45 +0.6 2,896,381 + ECD_02751 0.49 +0.9 2,896,382 - ECD_02751 0.49 +0.6 2,896,382 - ECD_02751 0.49 +0.9 2,896,454 + ECD_02751 0.54 +1.1 2,896,502 + ECD_02751 0.57 -2.1 2,896,509 + ECD_02751 0.57 +0.7 2,896,509 + ECD_02751 0.57 -1.2 2,896,509 + ECD_02751 0.57 -1.2 2,896,510 - ECD_02751 0.57 +0.1 2,896,522 + ECD_02751 0.58 +0.3 2,896,522 + ECD_02751 0.58 +0.7 2,896,544 - ECD_02751 0.60 +0.5 2,896,626 - ECD_02751 0.65 -0.6 2,896,737 - ECD_02751 0.73 +2.0 2,896,824 + ECD_02751 0.79 -0.4 2,896,824 + ECD_02751 0.79 -0.6 2,896,825 - ECD_02751 0.79 +2.3 2,896,838 + ECD_02751 0.80 +0.7 2,896,856 + ECD_02751 0.81 -0.6 2,896,856 + ECD_02751 0.81 -1.3 2,896,992 - +1.5 2,896,992 - +3.4 2,897,000 + +1.2 2,897,001 - -0.5 2,897,001 - -1.2 2,897,016 - +0.6 2,897,016 - +0.1 2,897,016 - -0.4 2,897,016 - -1.8 2,897,016 - -0.4 2,897,016 - +0.4 2,897,016 - +0.1 2,897,016 - +0.2 2,897,016 - +0.3 2,897,019 + -0.9 2,897,040 + +0.9 2,897,066 + +0.5 2,897,066 + -0.4 2,897,067 - +0.4 2,897,099 - +1.1 2,897,099 - +0.9 2,897,167 + -0.6 2,897,167 + +0.6 2,897,189 - +1.0 2,897,189 - -0.2 2,897,189 - -0.4 2,897,189 - +0.0 2,897,211 + +1.1 2,897,227 + ECD_02752 0.10 +1.3 2,897,227 + ECD_02752 0.10 -0.7 2,897,229 + ECD_02752 0.10 +0.4 2,897,229 + ECD_02752 0.10 -0.5 2,897,229 + ECD_02752 0.10 +0.8 2,897,229 + ECD_02752 0.10 +0.6 2,897,229 + ECD_02752 0.10 -0.7 2,897,230 - ECD_02752 0.11 -0.6 2,897,230 - ECD_02752 0.11 -0.3 2,897,230 - ECD_02752 0.11 +1.0 2,897,230 - ECD_02752 0.11 -0.6 2,897,348 - ECD_02752 0.24 +0.4 2,897,365 - ECD_02752 0.26 -0.4 2,897,368 + ECD_02752 0.26 +0.3 2,897,451 - ECD_02752 0.35 +0.9 2,897,497 - ECD_02752 0.40 +0.1 2,897,534 + ECD_02752 0.44 -3.3 2,897,535 - ECD_02752 0.45 +0.8 2,897,535 - ECD_02752 0.45 +0.3 2,897,546 - ECD_02752 0.46 +1.0 2,897,579 + ECD_02752 0.49 -2.6 2,897,596 + ECD_02752 0.51 +0.5 2,897,597 - ECD_02752 0.52 -2.1 2,897,597 - ECD_02752 0.52 +1.3 2,897,679 + ECD_02752 0.61 +0.0 2,897,680 - ECD_02752 0.61 -0.4 2,897,683 + ECD_02752 0.61 +0.9 2,897,684 - ECD_02752 0.61 -1.5 2,897,713 + ECD_02752 0.64 +0.5 2,897,728 + ECD_02752 0.66 +1.5 2,897,728 + ECD_02752 0.66 +1.7 2,897,728 + ECD_02752 0.66 +0.8 2,897,729 - ECD_02752 0.66 +0.1 2,897,729 - ECD_02752 0.66 +0.7 2,897,731 + ECD_02752 0.66 -1.8 2,897,731 + ECD_02752 0.66 +0.2 2,897,732 - ECD_02752 0.67 -1.2 2,897,732 - ECD_02752 0.67 +0.3 2,897,735 + ECD_02752 0.67 +0.5 2,897,773 + ECD_02752 0.71 +1.2 2,897,882 + ECD_02752 0.83 -1.0 2,897,887 + ECD_02752 0.84 +0.1 2,897,888 - ECD_02752 0.84 -0.6 2,897,990 + -0.6 2,898,076 + -0.9 2,898,103 + +0.8 2,898,103 + -0.4 2,898,104 - +1.7 2,898,111 + +1.0 2,898,111 + -1.3 2,898,111 + -0.7 2,898,111 + +0.1 2,898,111 + -0.8 2,898,111 + -1.8 2,898,111 + -0.7 2,898,111 + -0.7 2,898,112 - +1.7 2,898,112 - +0.0 2,898,112 - -0.3 2,898,112 - +0.7
Or see this region's nucleotide sequence