Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02715 and ECD_02716 are separated by 14 nucleotides ECD_02716 and ECD_02717 are separated by 35 nucleotides
ECD_02715: ECD_02715 - xanthine permease, at 2,855,212 to 2,856,612
_02715
ECD_02716: ECD_02716 - guanine deaminase, at 2,856,627 to 2,857,946
_02716
ECD_02717: ECD_02717 - guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter, at 2,857,982 to 2,859,349
_02717
Position (kb)
2856
2857
2858 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2855.632 kb on + strand, within ECD_02715 at 2855.633 kb on - strand, within ECD_02715 at 2855.637 kb on - strand, within ECD_02715 at 2855.637 kb on - strand, within ECD_02715 at 2855.649 kb on + strand, within ECD_02715 at 2855.649 kb on + strand, within ECD_02715 at 2855.668 kb on - strand, within ECD_02715 at 2855.676 kb on - strand, within ECD_02715 at 2855.690 kb on + strand, within ECD_02715 at 2855.691 kb on - strand, within ECD_02715 at 2855.691 kb on - strand, within ECD_02715 at 2855.700 kb on + strand, within ECD_02715 at 2855.752 kb on - strand, within ECD_02715 at 2855.752 kb on - strand, within ECD_02715 at 2855.764 kb on + strand, within ECD_02715 at 2855.764 kb on + strand, within ECD_02715 at 2855.764 kb on + strand, within ECD_02715 at 2855.764 kb on + strand, within ECD_02715 at 2855.764 kb on + strand, within ECD_02715 at 2855.764 kb on + strand, within ECD_02715 at 2855.765 kb on - strand, within ECD_02715 at 2855.765 kb on - strand, within ECD_02715 at 2855.795 kb on + strand, within ECD_02715 at 2855.795 kb on + strand, within ECD_02715 at 2855.795 kb on + strand, within ECD_02715 at 2855.796 kb on - strand, within ECD_02715 at 2855.837 kb on + strand, within ECD_02715 at 2855.864 kb on + strand, within ECD_02715 at 2855.864 kb on + strand, within ECD_02715 at 2855.865 kb on - strand, within ECD_02715 at 2855.875 kb on + strand, within ECD_02715 at 2855.875 kb on + strand, within ECD_02715 at 2855.875 kb on + strand, within ECD_02715 at 2855.876 kb on - strand, within ECD_02715 at 2855.876 kb on - strand, within ECD_02715 at 2855.876 kb on - strand, within ECD_02715 at 2855.876 kb on - strand, within ECD_02715 at 2855.877 kb on + strand, within ECD_02715 at 2855.916 kb on + strand, within ECD_02715 at 2855.960 kb on - strand, within ECD_02715 at 2855.974 kb on - strand, within ECD_02715 at 2856.007 kb on + strand, within ECD_02715 at 2856.016 kb on - strand, within ECD_02715 at 2856.088 kb on + strand, within ECD_02715 at 2856.161 kb on + strand, within ECD_02715 at 2856.161 kb on + strand, within ECD_02715 at 2856.186 kb on + strand, within ECD_02715 at 2856.223 kb on + strand, within ECD_02715 at 2856.224 kb on - strand, within ECD_02715 at 2856.267 kb on - strand, within ECD_02715 at 2856.386 kb on + strand, within ECD_02715 at 2856.386 kb on + strand, within ECD_02715 at 2856.405 kb on + strand, within ECD_02715 at 2856.405 kb on + strand, within ECD_02715 at 2856.405 kb on + strand, within ECD_02715 at 2856.405 kb on + strand, within ECD_02715 at 2856.406 kb on - strand, within ECD_02715 at 2856.406 kb on - strand, within ECD_02715 at 2856.406 kb on - strand, within ECD_02715 at 2856.406 kb on - strand, within ECD_02715 at 2856.406 kb on - strand, within ECD_02715 at 2856.422 kb on + strand, within ECD_02715 at 2856.422 kb on + strand, within ECD_02715 at 2856.422 kb on + strand, within ECD_02715 at 2856.429 kb on - strand, within ECD_02715 at 2856.446 kb on - strand, within ECD_02715 at 2856.446 kb on - strand, within ECD_02715 at 2856.485 kb on - strand at 2856.488 kb on + strand at 2856.534 kb on - strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.540 kb on + strand at 2856.541 kb on - strand at 2856.585 kb on + strand at 2856.588 kb on + strand at 2856.588 kb on + strand at 2856.588 kb on + strand at 2856.616 kb on + strand at 2856.616 kb on + strand at 2856.616 kb on + strand at 2856.616 kb on + strand at 2856.649 kb on + strand at 2856.671 kb on + strand at 2856.672 kb on - strand at 2856.742 kb on + strand at 2856.742 kb on + strand at 2856.848 kb on - strand, within ECD_02716 at 2856.850 kb on + strand, within ECD_02716 at 2856.850 kb on + strand, within ECD_02716 at 2856.851 kb on - strand, within ECD_02716 at 2856.872 kb on + strand, within ECD_02716 at 2856.872 kb on + strand, within ECD_02716 at 2856.872 kb on + strand, within ECD_02716 at 2856.873 kb on - strand, within ECD_02716 at 2856.907 kb on - strand, within ECD_02716 at 2856.907 kb on - strand, within ECD_02716 at 2856.907 kb on - strand, within ECD_02716 at 2856.935 kb on + strand, within ECD_02716 at 2856.935 kb on + strand, within ECD_02716 at 2856.973 kb on + strand, within ECD_02716 at 2856.974 kb on - strand, within ECD_02716 at 2856.978 kb on + strand, within ECD_02716 at 2857.018 kb on + strand, within ECD_02716 at 2857.019 kb on - strand, within ECD_02716 at 2857.022 kb on + strand, within ECD_02716 at 2857.106 kb on + strand, within ECD_02716 at 2857.106 kb on + strand, within ECD_02716 at 2857.106 kb on + strand, within ECD_02716 at 2857.106 kb on + strand, within ECD_02716 at 2857.106 kb on + strand, within ECD_02716 at 2857.107 kb on - strand, within ECD_02716 at 2857.107 kb on - strand, within ECD_02716 at 2857.107 kb on - strand, within ECD_02716 at 2857.112 kb on + strand, within ECD_02716 at 2857.113 kb on - strand, within ECD_02716 at 2857.113 kb on - strand, within ECD_02716 at 2857.155 kb on + strand, within ECD_02716 at 2857.155 kb on + strand, within ECD_02716 at 2857.234 kb on + strand, within ECD_02716 at 2857.234 kb on + strand, within ECD_02716 at 2857.235 kb on - strand, within ECD_02716 at 2857.235 kb on - strand, within ECD_02716 at 2857.235 kb on - strand, within ECD_02716 at 2857.235 kb on - strand, within ECD_02716 at 2857.235 kb on - strand, within ECD_02716 at 2857.235 kb on - strand, within ECD_02716 at 2857.236 kb on + strand, within ECD_02716 at 2857.237 kb on - strand, within ECD_02716 at 2857.237 kb on - strand, within ECD_02716 at 2857.331 kb on + strand, within ECD_02716 at 2857.331 kb on + strand, within ECD_02716 at 2857.410 kb on + strand, within ECD_02716 at 2857.586 kb on + strand, within ECD_02716 at 2857.586 kb on + strand, within ECD_02716 at 2857.586 kb on + strand, within ECD_02716 at 2857.656 kb on + strand, within ECD_02716 at 2857.663 kb on + strand, within ECD_02716 at 2857.663 kb on + strand, within ECD_02716 at 2857.664 kb on - strand, within ECD_02716 at 2857.672 kb on + strand, within ECD_02716 at 2857.673 kb on - strand, within ECD_02716 at 2857.696 kb on - strand, within ECD_02716 at 2857.819 kb on + strand at 2857.820 kb on - strand at 2857.902 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.911 kb on + strand at 2857.912 kb on - strand at 2857.912 kb on - strand at 2857.912 kb on - strand at 2857.912 kb on - strand at 2857.912 kb on - strand at 2857.933 kb on - strand at 2857.945 kb on - strand at 2857.945 kb on - strand at 2857.945 kb on - strand at 2857.945 kb on - strand at 2857.947 kb on + strand at 2857.947 kb on + strand at 2857.947 kb on + strand at 2857.948 kb on - strand at 2857.951 kb on - strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.981 kb on + strand at 2857.982 kb on - strand at 2857.982 kb on - strand at 2857.982 kb on - strand at 2857.982 kb on - strand at 2857.982 kb on - strand at 2857.982 kb on - strand at 2857.982 kb on - strand at 2857.998 kb on + strand at 2857.998 kb on + strand at 2857.998 kb on + strand at 2857.998 kb on + strand at 2857.999 kb on - strand at 2857.999 kb on - strand at 2858.053 kb on + strand at 2858.085 kb on + strand at 2858.085 kb on + strand at 2858.086 kb on - strand at 2858.229 kb on + strand, within ECD_02717 at 2858.315 kb on - strand, within ECD_02717 at 2858.390 kb on - strand, within ECD_02717 at 2858.390 kb on - strand, within ECD_02717 at 2858.401 kb on - strand, within ECD_02717 at 2858.401 kb on - strand, within ECD_02717 at 2858.401 kb on - strand, within ECD_02717 at 2858.401 kb on - strand, within ECD_02717 at 2858.401 kb on - strand, within ECD_02717 at 2858.405 kb on - strand, within ECD_02717 at 2858.405 kb on - strand, within ECD_02717 at 2858.431 kb on + strand, within ECD_02717 at 2858.486 kb on - strand, within ECD_02717 at 2858.630 kb on - strand, within ECD_02717 at 2858.675 kb on + strand, within ECD_02717 at 2858.675 kb on + strand, within ECD_02717 at 2858.676 kb on - strand, within ECD_02717 at 2858.719 kb on + strand, within ECD_02717 at 2858.719 kb on + strand, within ECD_02717 at 2858.720 kb on - strand, within ECD_02717 at 2858.769 kb on + strand, within ECD_02717 at 2858.770 kb on - strand, within ECD_02717 at 2858.860 kb on + strand, within ECD_02717 at 2858.910 kb on + strand, within ECD_02717 at 2858.910 kb on + strand, within ECD_02717 at 2858.910 kb on + strand, within ECD_02717
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 2,855,632 + ECD_02715 0.30 -0.6 2,855,633 - ECD_02715 0.30 -0.5 2,855,637 - ECD_02715 0.30 +0.1 2,855,637 - ECD_02715 0.30 +0.8 2,855,649 + ECD_02715 0.31 +0.1 2,855,649 + ECD_02715 0.31 -0.2 2,855,668 - ECD_02715 0.33 +1.1 2,855,676 - ECD_02715 0.33 -3.1 2,855,690 + ECD_02715 0.34 +0.4 2,855,691 - ECD_02715 0.34 +0.2 2,855,691 - ECD_02715 0.34 +0.7 2,855,700 + ECD_02715 0.35 -0.3 2,855,752 - ECD_02715 0.39 +1.0 2,855,752 - ECD_02715 0.39 -1.7 2,855,764 + ECD_02715 0.39 +0.4 2,855,764 + ECD_02715 0.39 +0.1 2,855,764 + ECD_02715 0.39 +0.7 2,855,764 + ECD_02715 0.39 +0.8 2,855,764 + ECD_02715 0.39 -0.4 2,855,764 + ECD_02715 0.39 -0.4 2,855,765 - ECD_02715 0.39 +0.5 2,855,765 - ECD_02715 0.39 -0.3 2,855,795 + ECD_02715 0.42 -1.4 2,855,795 + ECD_02715 0.42 +0.4 2,855,795 + ECD_02715 0.42 +0.7 2,855,796 - ECD_02715 0.42 +0.6 2,855,837 + ECD_02715 0.45 -0.4 2,855,864 + ECD_02715 0.47 -0.2 2,855,864 + ECD_02715 0.47 +0.2 2,855,865 - ECD_02715 0.47 +0.8 2,855,875 + ECD_02715 0.47 +0.1 2,855,875 + ECD_02715 0.47 -0.2 2,855,875 + ECD_02715 0.47 -0.3 2,855,876 - ECD_02715 0.47 -1.0 2,855,876 - ECD_02715 0.47 -0.7 2,855,876 - ECD_02715 0.47 +0.9 2,855,876 - ECD_02715 0.47 +0.8 2,855,877 + ECD_02715 0.47 +0.1 2,855,916 + ECD_02715 0.50 -0.2 2,855,960 - ECD_02715 0.53 -0.6 2,855,974 - ECD_02715 0.54 -1.4 2,856,007 + ECD_02715 0.57 -2.5 2,856,016 - ECD_02715 0.57 +1.5 2,856,088 + ECD_02715 0.63 -0.7 2,856,161 + ECD_02715 0.68 +0.7 2,856,161 + ECD_02715 0.68 -1.1 2,856,186 + ECD_02715 0.70 +1.2 2,856,223 + ECD_02715 0.72 +0.0 2,856,224 - ECD_02715 0.72 +0.0 2,856,267 - ECD_02715 0.75 -1.7 2,856,386 + ECD_02715 0.84 -0.8 2,856,386 + ECD_02715 0.84 -0.8 2,856,405 + ECD_02715 0.85 +0.5 2,856,405 + ECD_02715 0.85 -1.7 2,856,405 + ECD_02715 0.85 +1.3 2,856,405 + ECD_02715 0.85 +1.3 2,856,406 - ECD_02715 0.85 -1.0 2,856,406 - ECD_02715 0.85 -0.0 2,856,406 - ECD_02715 0.85 -0.6 2,856,406 - ECD_02715 0.85 -1.1 2,856,406 - ECD_02715 0.85 +0.9 2,856,422 + ECD_02715 0.86 +0.8 2,856,422 + ECD_02715 0.86 -0.3 2,856,422 + ECD_02715 0.86 -0.5 2,856,429 - ECD_02715 0.87 +1.6 2,856,446 - ECD_02715 0.88 -0.2 2,856,446 - ECD_02715 0.88 +0.8 2,856,485 - +0.5 2,856,488 + -1.9 2,856,534 - -1.2 2,856,540 + -0.7 2,856,540 + -1.1 2,856,540 + -0.5 2,856,540 + +0.6 2,856,540 + -0.6 2,856,540 + -0.9 2,856,540 + -0.9 2,856,540 + -0.2 2,856,540 + -0.0 2,856,540 + +1.4 2,856,540 + -0.5 2,856,541 - -0.8 2,856,585 + +0.8 2,856,588 + -0.2 2,856,588 + +0.3 2,856,588 + +0.5 2,856,616 + +1.6 2,856,616 + +2.6 2,856,616 + -0.7 2,856,616 + -0.2 2,856,649 + -1.2 2,856,671 + +0.2 2,856,672 - -2.2 2,856,742 + +0.3 2,856,742 + +0.1 2,856,848 - ECD_02716 0.17 -0.0 2,856,850 + ECD_02716 0.17 -0.3 2,856,850 + ECD_02716 0.17 -0.3 2,856,851 - ECD_02716 0.17 -2.4 2,856,872 + ECD_02716 0.19 -0.4 2,856,872 + ECD_02716 0.19 -0.2 2,856,872 + ECD_02716 0.19 -0.6 2,856,873 - ECD_02716 0.19 -1.7 2,856,907 - ECD_02716 0.21 -2.6 2,856,907 - ECD_02716 0.21 +0.6 2,856,907 - ECD_02716 0.21 -1.1 2,856,935 + ECD_02716 0.23 +1.1 2,856,935 + ECD_02716 0.23 +0.5 2,856,973 + ECD_02716 0.26 +0.9 2,856,974 - ECD_02716 0.26 +0.7 2,856,978 + ECD_02716 0.27 +0.2 2,857,018 + ECD_02716 0.30 +0.2 2,857,019 - ECD_02716 0.30 -1.0 2,857,022 + ECD_02716 0.30 -0.7 2,857,106 + ECD_02716 0.36 +1.6 2,857,106 + ECD_02716 0.36 -2.0 2,857,106 + ECD_02716 0.36 +0.5 2,857,106 + ECD_02716 0.36 +0.1 2,857,106 + ECD_02716 0.36 +0.6 2,857,107 - ECD_02716 0.36 +2.5 2,857,107 - ECD_02716 0.36 -0.7 2,857,107 - ECD_02716 0.36 +0.5 2,857,112 + ECD_02716 0.37 +0.2 2,857,113 - ECD_02716 0.37 -0.7 2,857,113 - ECD_02716 0.37 -0.1 2,857,155 + ECD_02716 0.40 -1.9 2,857,155 + ECD_02716 0.40 -1.2 2,857,234 + ECD_02716 0.46 -1.7 2,857,234 + ECD_02716 0.46 +1.6 2,857,235 - ECD_02716 0.46 -1.1 2,857,235 - ECD_02716 0.46 +0.0 2,857,235 - ECD_02716 0.46 -0.0 2,857,235 - ECD_02716 0.46 -0.7 2,857,235 - ECD_02716 0.46 -0.4 2,857,235 - ECD_02716 0.46 +0.3 2,857,236 + ECD_02716 0.46 -0.2 2,857,237 - ECD_02716 0.46 -0.7 2,857,237 - ECD_02716 0.46 -0.1 2,857,331 + ECD_02716 0.53 -0.9 2,857,331 + ECD_02716 0.53 +0.1 2,857,410 + ECD_02716 0.59 +0.4 2,857,586 + ECD_02716 0.73 -1.7 2,857,586 + ECD_02716 0.73 -1.2 2,857,586 + ECD_02716 0.73 +0.0 2,857,656 + ECD_02716 0.78 +0.8 2,857,663 + ECD_02716 0.78 -0.8 2,857,663 + ECD_02716 0.78 -1.1 2,857,664 - ECD_02716 0.79 -0.3 2,857,672 + ECD_02716 0.79 +0.8 2,857,673 - ECD_02716 0.79 -0.1 2,857,696 - ECD_02716 0.81 +0.1 2,857,819 + +0.9 2,857,820 - +0.8 2,857,902 + +1.4 2,857,911 + +0.3 2,857,911 + +0.3 2,857,911 + -1.8 2,857,911 + +0.3 2,857,911 + +0.4 2,857,911 + -2.8 2,857,911 + -0.2 2,857,911 + -0.7 2,857,911 + -0.3 2,857,912 - +0.2 2,857,912 - -0.8 2,857,912 - -1.7 2,857,912 - -1.0 2,857,912 - +1.9 2,857,933 - +0.2 2,857,945 - -0.2 2,857,945 - -0.9 2,857,945 - -0.1 2,857,945 - +0.6 2,857,947 + -0.8 2,857,947 + -1.0 2,857,947 + -1.4 2,857,948 - +0.3 2,857,951 - +1.5 2,857,981 + -0.1 2,857,981 + -0.4 2,857,981 + +0.6 2,857,981 + +0.8 2,857,981 + +0.6 2,857,981 + -0.9 2,857,981 + +0.0 2,857,981 + -1.9 2,857,982 - -0.0 2,857,982 - -2.3 2,857,982 - +0.2 2,857,982 - +0.8 2,857,982 - -2.7 2,857,982 - +0.3 2,857,982 - +0.4 2,857,998 + +1.4 2,857,998 + -0.8 2,857,998 + -0.7 2,857,998 + -0.8 2,857,999 - -0.4 2,857,999 - -0.3 2,858,053 + -0.1 2,858,085 + -2.2 2,858,085 + +0.2 2,858,086 - +2.5 2,858,229 + ECD_02717 0.18 -2.8 2,858,315 - ECD_02717 0.24 +0.4 2,858,390 - ECD_02717 0.30 +0.6 2,858,390 - ECD_02717 0.30 +1.2 2,858,401 - ECD_02717 0.31 +0.7 2,858,401 - ECD_02717 0.31 -1.4 2,858,401 - ECD_02717 0.31 +3.2 2,858,401 - ECD_02717 0.31 -0.6 2,858,401 - ECD_02717 0.31 +0.4 2,858,405 - ECD_02717 0.31 -1.7 2,858,405 - ECD_02717 0.31 +0.3 2,858,431 + ECD_02717 0.33 +0.2 2,858,486 - ECD_02717 0.37 +1.5 2,858,630 - ECD_02717 0.47 +0.9 2,858,675 + ECD_02717 0.51 -2.3 2,858,675 + ECD_02717 0.51 -0.4 2,858,676 - ECD_02717 0.51 +1.1 2,858,719 + ECD_02717 0.54 -1.8 2,858,719 + ECD_02717 0.54 -0.3 2,858,720 - ECD_02717 0.54 +0.5 2,858,769 + ECD_02717 0.58 +0.3 2,858,770 - ECD_02717 0.58 +1.2 2,858,860 + ECD_02717 0.64 +0.1 2,858,910 + ECD_02717 0.68 -0.6 2,858,910 + ECD_02717 0.68 -2.6 2,858,910 + ECD_02717 0.68 +0.3
Or see this region's nucleotide sequence