Strain Fitness in Escherichia coli BL21 around ECD_02585

Experiment: Bas24

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02583 and ECD_02584 are separated by 105 nucleotidesECD_02584 and ECD_02585 are separated by 50 nucleotidesECD_02585 and ECD_02586 are separated by 195 nucleotides ECD_02583: ECD_02583 - methyl-directed mismatch repair protein, at 2,697,060 to 2,699,621 _02583 ECD_02584: ECD_02584 - serine/threonine-specific protein phosphatase 2, at 2,699,727 to 2,700,383 _02584 ECD_02585: ECD_02585 - DeoR family putative transcriptional regulator, at 2,700,434 to 2,701,201 _02585 ECD_02586: ECD_02586 - putative dehydrogenase, at 2,701,397 to 2,702,305 _02586 Position (kb) 2700 2701 2702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2699.619 kb on + strandat 2699.656 kb on - strandat 2699.775 kb on - strandat 2699.777 kb on - strandat 2699.860 kb on + strand, within ECD_02584at 2699.861 kb on - strand, within ECD_02584at 2700.067 kb on + strand, within ECD_02584at 2700.514 kb on + strand, within ECD_02585at 2700.518 kb on - strand, within ECD_02585at 2700.518 kb on - strand, within ECD_02585at 2700.518 kb on - strand, within ECD_02585at 2700.570 kb on + strand, within ECD_02585at 2700.641 kb on - strand, within ECD_02585at 2700.692 kb on - strand, within ECD_02585at 2700.800 kb on - strand, within ECD_02585at 2700.800 kb on - strand, within ECD_02585at 2700.817 kb on - strand, within ECD_02585at 2700.817 kb on - strand, within ECD_02585at 2700.912 kb on + strand, within ECD_02585at 2700.912 kb on + strand, within ECD_02585at 2700.912 kb on + strand, within ECD_02585at 2700.913 kb on - strand, within ECD_02585at 2700.913 kb on - strand, within ECD_02585at 2700.913 kb on - strand, within ECD_02585at 2700.916 kb on + strand, within ECD_02585at 2700.917 kb on - strand, within ECD_02585at 2700.917 kb on - strand, within ECD_02585at 2700.917 kb on - strand, within ECD_02585at 2700.917 kb on - strand, within ECD_02585at 2700.917 kb on - strand, within ECD_02585at 2700.917 kb on - strand, within ECD_02585at 2701.102 kb on + strand, within ECD_02585at 2701.102 kb on + strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.103 kb on - strand, within ECD_02585at 2701.138 kb on + strandat 2701.139 kb on - strandat 2701.161 kb on - strandat 2701.161 kb on - strandat 2701.161 kb on - strandat 2701.234 kb on + strandat 2701.234 kb on + strandat 2701.234 kb on + strandat 2701.235 kb on - strandat 2701.235 kb on - strandat 2701.235 kb on - strandat 2701.235 kb on - strandat 2701.239 kb on + strandat 2701.240 kb on - strandat 2701.269 kb on + strandat 2701.277 kb on - strandat 2701.277 kb on - strandat 2701.277 kb on - strandat 2701.286 kb on - strandat 2701.347 kb on + strandat 2701.437 kb on + strandat 2701.437 kb on + strandat 2701.469 kb on + strandat 2701.469 kb on + strandat 2701.469 kb on + strandat 2701.469 kb on + strandat 2701.469 kb on + strandat 2701.469 kb on + strandat 2701.469 kb on + strandat 2701.489 kb on + strand, within ECD_02586at 2701.489 kb on + strand, within ECD_02586at 2701.490 kb on - strand, within ECD_02586at 2701.525 kb on + strand, within ECD_02586at 2701.627 kb on + strand, within ECD_02586at 2701.791 kb on + strand, within ECD_02586at 2701.897 kb on - strand, within ECD_02586at 2701.897 kb on - strand, within ECD_02586at 2701.914 kb on + strand, within ECD_02586at 2701.915 kb on - strand, within ECD_02586at 2701.956 kb on + strand, within ECD_02586at 2701.956 kb on + strand, within ECD_02586at 2701.956 kb on + strand, within ECD_02586at 2701.956 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.960 kb on + strand, within ECD_02586at 2701.961 kb on - strand, within ECD_02586at 2701.961 kb on - strand, within ECD_02586at 2701.961 kb on - strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.024 kb on + strand, within ECD_02586at 2702.025 kb on - strand, within ECD_02586at 2702.025 kb on - strand, within ECD_02586at 2702.025 kb on - strand, within ECD_02586at 2702.025 kb on - strand, within ECD_02586at 2702.155 kb on + strand, within ECD_02586

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
remove
2,699,619 + +0.7
2,699,656 - +0.3
2,699,775 - +1.4
2,699,777 - -2.6
2,699,860 + ECD_02584 0.20 -1.1
2,699,861 - ECD_02584 0.20 -0.9
2,700,067 + ECD_02584 0.52 +0.1
2,700,514 + ECD_02585 0.10 +2.0
2,700,518 - ECD_02585 0.11 +1.3
2,700,518 - ECD_02585 0.11 +1.3
2,700,518 - ECD_02585 0.11 +1.0
2,700,570 + ECD_02585 0.18 +0.1
2,700,641 - ECD_02585 0.27 +0.5
2,700,692 - ECD_02585 0.34 +1.6
2,700,800 - ECD_02585 0.48 -0.1
2,700,800 - ECD_02585 0.48 +1.4
2,700,817 - ECD_02585 0.50 -0.3
2,700,817 - ECD_02585 0.50 +1.0
2,700,912 + ECD_02585 0.62 +1.9
2,700,912 + ECD_02585 0.62 +1.8
2,700,912 + ECD_02585 0.62 +0.2
2,700,913 - ECD_02585 0.62 +1.5
2,700,913 - ECD_02585 0.62 +2.3
2,700,913 - ECD_02585 0.62 +0.0
2,700,916 + ECD_02585 0.63 +0.6
2,700,917 - ECD_02585 0.63 +0.4
2,700,917 - ECD_02585 0.63 -1.3
2,700,917 - ECD_02585 0.63 +0.1
2,700,917 - ECD_02585 0.63 +0.6
2,700,917 - ECD_02585 0.63 +0.6
2,700,917 - ECD_02585 0.63 +3.0
2,701,102 + ECD_02585 0.87 -0.4
2,701,102 + ECD_02585 0.87 +0.9
2,701,103 - ECD_02585 0.87 -0.2
2,701,103 - ECD_02585 0.87 +0.5
2,701,103 - ECD_02585 0.87 +0.2
2,701,103 - ECD_02585 0.87 +0.3
2,701,103 - ECD_02585 0.87 +0.8
2,701,103 - ECD_02585 0.87 +0.4
2,701,103 - ECD_02585 0.87 +1.5
2,701,103 - ECD_02585 0.87 +0.2
2,701,103 - ECD_02585 0.87 +0.6
2,701,103 - ECD_02585 0.87 +0.5
2,701,138 + +1.3
2,701,139 - +2.1
2,701,161 - -0.4
2,701,161 - +0.3
2,701,161 - -0.7
2,701,234 + +2.6
2,701,234 + +1.4
2,701,234 + +1.0
2,701,235 - -0.5
2,701,235 - -3.0
2,701,235 - -0.6
2,701,235 - -0.9
2,701,239 + +1.8
2,701,240 - +0.1
2,701,269 + +0.6
2,701,277 - -0.6
2,701,277 - +0.4
2,701,277 - -0.8
2,701,286 - -0.1
2,701,347 + -0.7
2,701,437 + -0.2
2,701,437 + +0.8
2,701,469 + -0.4
2,701,469 + -0.0
2,701,469 + +1.1
2,701,469 + -0.5
2,701,469 + +0.7
2,701,469 + +0.7
2,701,469 + +0.4
2,701,489 + ECD_02586 0.10 -0.4
2,701,489 + ECD_02586 0.10 +0.1
2,701,490 - ECD_02586 0.10 +0.3
2,701,525 + ECD_02586 0.14 +1.2
2,701,627 + ECD_02586 0.25 -1.1
2,701,791 + ECD_02586 0.43 -0.7
2,701,897 - ECD_02586 0.55 -0.2
2,701,897 - ECD_02586 0.55 +1.4
2,701,914 + ECD_02586 0.57 -0.0
2,701,915 - ECD_02586 0.57 +0.6
2,701,956 + ECD_02586 0.61 +0.7
2,701,956 + ECD_02586 0.61 -1.4
2,701,956 + ECD_02586 0.61 -0.4
2,701,956 + ECD_02586 0.61 -0.1
2,701,960 + ECD_02586 0.62 +0.2
2,701,960 + ECD_02586 0.62 -0.5
2,701,960 + ECD_02586 0.62 -0.1
2,701,960 + ECD_02586 0.62 +0.0
2,701,960 + ECD_02586 0.62 +0.8
2,701,960 + ECD_02586 0.62 +0.6
2,701,960 + ECD_02586 0.62 -0.3
2,701,960 + ECD_02586 0.62 +0.4
2,701,960 + ECD_02586 0.62 +0.4
2,701,960 + ECD_02586 0.62 -0.9
2,701,960 + ECD_02586 0.62 +0.4
2,701,961 - ECD_02586 0.62 +0.3
2,701,961 - ECD_02586 0.62 -0.3
2,701,961 - ECD_02586 0.62 -0.2
2,702,024 + ECD_02586 0.69 +0.3
2,702,024 + ECD_02586 0.69 +0.2
2,702,024 + ECD_02586 0.69 -0.8
2,702,024 + ECD_02586 0.69 -0.8
2,702,024 + ECD_02586 0.69 +0.4
2,702,024 + ECD_02586 0.69 +0.6
2,702,024 + ECD_02586 0.69 +0.7
2,702,024 + ECD_02586 0.69 +0.2
2,702,024 + ECD_02586 0.69 -0.2
2,702,024 + ECD_02586 0.69 +0.2
2,702,024 + ECD_02586 0.69 +0.8
2,702,024 + ECD_02586 0.69 -1.3
2,702,024 + ECD_02586 0.69 -1.2
2,702,024 + ECD_02586 0.69 +0.6
2,702,024 + ECD_02586 0.69 -0.0
2,702,025 - ECD_02586 0.69 +1.5
2,702,025 - ECD_02586 0.69 -0.9
2,702,025 - ECD_02586 0.69 +0.5
2,702,025 - ECD_02586 0.69 -0.4
2,702,155 + ECD_02586 0.83 +1.6

Or see this region's nucleotide sequence