Strain Fitness in Escherichia coli BL21 around ECD_02559

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02557 and ECD_02558 overlap by 8 nucleotidesECD_02558 and ECD_02559 overlap by 4 nucleotidesECD_02559 and ECD_02560 are separated by 186 nucleotides ECD_02557: ECD_02557 - sorbitol-inducible srl operon transcriptional repressor, at 2,669,014 to 2,669,787 _02557 ECD_02558: ECD_02558 - D-arabinose 5-phosphate isomerase, at 2,669,780 to 2,670,745 _02558 ECD_02559: ECD_02559 - anaerobic nitric oxide reductase DNA-binding transcriptional activator, at 2,670,742 to 2,672,256 _02559 ECD_02560: ECD_02560 - anaerobic nitric oxide reductase flavorubredoxin, at 2,672,443 to 2,673,882 _02560 Position (kb) 2670 2671 2672 2673Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.793 kb on + strandat 2669.818 kb on - strandat 2669.887 kb on + strand, within ECD_02558at 2669.951 kb on - strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.064 kb on + strand, within ECD_02558at 2670.065 kb on - strand, within ECD_02558at 2670.065 kb on - strand, within ECD_02558at 2670.072 kb on - strand, within ECD_02558at 2670.072 kb on - strand, within ECD_02558at 2670.103 kb on + strand, within ECD_02558at 2670.121 kb on + strand, within ECD_02558at 2670.121 kb on + strand, within ECD_02558at 2670.122 kb on - strand, within ECD_02558at 2670.122 kb on - strand, within ECD_02558at 2670.127 kb on + strand, within ECD_02558at 2670.196 kb on + strand, within ECD_02558at 2670.197 kb on - strand, within ECD_02558at 2670.204 kb on + strand, within ECD_02558at 2670.204 kb on + strand, within ECD_02558at 2670.205 kb on - strand, within ECD_02558at 2670.256 kb on + strand, within ECD_02558at 2670.257 kb on - strand, within ECD_02558at 2670.257 kb on - strand, within ECD_02558at 2670.311 kb on - strand, within ECD_02558at 2670.311 kb on - strand, within ECD_02558at 2670.370 kb on + strand, within ECD_02558at 2670.371 kb on - strand, within ECD_02558at 2670.371 kb on - strand, within ECD_02558at 2670.483 kb on + strand, within ECD_02558at 2670.483 kb on + strand, within ECD_02558at 2670.483 kb on + strand, within ECD_02558at 2670.484 kb on - strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.504 kb on + strand, within ECD_02558at 2670.505 kb on - strand, within ECD_02558at 2670.532 kb on - strand, within ECD_02558at 2670.532 kb on - strand, within ECD_02558at 2670.708 kb on + strandat 2670.709 kb on - strandat 2670.739 kb on + strandat 2670.739 kb on + strandat 2670.740 kb on - strandat 2670.740 kb on - strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.743 kb on + strandat 2670.744 kb on - strandat 2670.855 kb on + strandat 2670.856 kb on - strandat 2671.013 kb on - strand, within ECD_02559at 2671.013 kb on - strand, within ECD_02559at 2671.026 kb on + strand, within ECD_02559at 2671.026 kb on + strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.027 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.065 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.097 kb on - strand, within ECD_02559at 2671.099 kb on + strand, within ECD_02559at 2671.100 kb on - strand, within ECD_02559at 2671.100 kb on - strand, within ECD_02559at 2671.100 kb on - strand, within ECD_02559at 2671.344 kb on - strand, within ECD_02559at 2671.344 kb on - strand, within ECD_02559at 2671.344 kb on - strand, within ECD_02559at 2671.450 kb on - strand, within ECD_02559at 2671.450 kb on - strand, within ECD_02559at 2671.450 kb on - strand, within ECD_02559at 2671.464 kb on + strand, within ECD_02559at 2671.464 kb on + strand, within ECD_02559at 2671.536 kb on - strand, within ECD_02559at 2671.746 kb on + strand, within ECD_02559at 2671.747 kb on - strand, within ECD_02559at 2671.747 kb on - strand, within ECD_02559at 2671.747 kb on - strand, within ECD_02559at 2671.747 kb on - strand, within ECD_02559at 2671.964 kb on + strand, within ECD_02559at 2671.965 kb on - strand, within ECD_02559at 2671.965 kb on - strand, within ECD_02559at 2672.068 kb on + strand, within ECD_02559at 2672.068 kb on + strand, within ECD_02559at 2672.068 kb on + strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.069 kb on - strand, within ECD_02559at 2672.125 kb on + strandat 2672.125 kb on + strandat 2672.125 kb on + strandat 2672.125 kb on + strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.126 kb on - strandat 2672.161 kb on + strandat 2672.162 kb on - strandat 2672.162 kb on - strandat 2672.162 kb on - strandat 2672.162 kb on - strandat 2672.283 kb on - strandat 2672.283 kb on - strandat 2672.442 kb on + strandat 2672.442 kb on + strandat 2672.442 kb on + strandat 2672.443 kb on - strandat 2672.443 kb on - strandat 2672.443 kb on - strandat 2672.448 kb on + strandat 2672.448 kb on + strandat 2672.523 kb on + strandat 2672.545 kb on + strandat 2672.546 kb on - strandat 2672.546 kb on - strandat 2672.546 kb on - strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.550 kb on + strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.551 kb on - strandat 2672.554 kb on + strandat 2672.601 kb on + strand, within ECD_02560at 2672.602 kb on - strand, within ECD_02560at 2672.635 kb on - strand, within ECD_02560at 2672.662 kb on + strand, within ECD_02560at 2672.662 kb on + strand, within ECD_02560at 2672.662 kb on + strand, within ECD_02560at 2672.662 kb on + strand, within ECD_02560at 2672.663 kb on - strand, within ECD_02560at 2672.663 kb on - strand, within ECD_02560at 2672.663 kb on - strand, within ECD_02560at 2672.663 kb on - strand, within ECD_02560at 2672.663 kb on - strand, within ECD_02560at 2672.673 kb on + strand, within ECD_02560at 2672.674 kb on - strand, within ECD_02560at 2672.734 kb on - strand, within ECD_02560at 2672.743 kb on + strand, within ECD_02560at 2672.743 kb on + strand, within ECD_02560at 2672.743 kb on + strand, within ECD_02560at 2672.743 kb on + strand, within ECD_02560at 2672.743 kb on + strand, within ECD_02560at 2672.744 kb on - strand, within ECD_02560at 2672.744 kb on - strand, within ECD_02560at 2672.744 kb on - strand, within ECD_02560at 2672.744 kb on - strand, within ECD_02560at 2672.744 kb on - strand, within ECD_02560at 2672.748 kb on + strand, within ECD_02560at 2672.748 kb on + strand, within ECD_02560at 2672.748 kb on + strand, within ECD_02560at 2672.749 kb on - strand, within ECD_02560at 2672.772 kb on - strand, within ECD_02560at 2672.772 kb on - strand, within ECD_02560at 2672.805 kb on + strand, within ECD_02560at 2672.805 kb on + strand, within ECD_02560at 2672.806 kb on - strand, within ECD_02560at 2672.905 kb on + strand, within ECD_02560at 2672.905 kb on + strand, within ECD_02560at 2672.905 kb on + strand, within ECD_02560at 2672.905 kb on + strand, within ECD_02560at 2672.905 kb on + strand, within ECD_02560at 2672.905 kb on + strand, within ECD_02560at 2672.906 kb on - strand, within ECD_02560at 2672.956 kb on + strand, within ECD_02560at 2672.956 kb on + strand, within ECD_02560at 2672.956 kb on + strand, within ECD_02560at 2672.956 kb on + strand, within ECD_02560at 2672.957 kb on - strand, within ECD_02560at 2672.957 kb on - strand, within ECD_02560at 2672.957 kb on - strand, within ECD_02560at 2672.957 kb on - strand, within ECD_02560at 2673.025 kb on + strand, within ECD_02560at 2673.026 kb on - strand, within ECD_02560at 2673.026 kb on - strand, within ECD_02560at 2673.059 kb on + strand, within ECD_02560at 2673.090 kb on + strand, within ECD_02560at 2673.091 kb on - strand, within ECD_02560at 2673.095 kb on + strand, within ECD_02560at 2673.096 kb on - strand, within ECD_02560at 2673.110 kb on + strand, within ECD_02560at 2673.131 kb on + strand, within ECD_02560at 2673.166 kb on + strand, within ECD_02560at 2673.231 kb on + strand, within ECD_02560

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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2,669,793 + -0.4
2,669,793 + -0.6
2,669,793 + -0.8
2,669,793 + -0.3
2,669,818 - -0.3
2,669,887 + ECD_02558 0.11 +0.2
2,669,951 - ECD_02558 0.18 +0.0
2,670,064 + ECD_02558 0.29 -1.2
2,670,064 + ECD_02558 0.29 +0.2
2,670,064 + ECD_02558 0.29 +1.6
2,670,064 + ECD_02558 0.29 +1.4
2,670,064 + ECD_02558 0.29 +1.0
2,670,065 - ECD_02558 0.30 -1.4
2,670,065 - ECD_02558 0.30 +2.3
2,670,072 - ECD_02558 0.30 -0.9
2,670,072 - ECD_02558 0.30 -1.1
2,670,103 + ECD_02558 0.33 -0.3
2,670,121 + ECD_02558 0.35 -1.6
2,670,121 + ECD_02558 0.35 -1.4
2,670,122 - ECD_02558 0.35 -2.2
2,670,122 - ECD_02558 0.35 +0.4
2,670,127 + ECD_02558 0.36 +0.0
2,670,196 + ECD_02558 0.43 +0.7
2,670,197 - ECD_02558 0.43 -0.2
2,670,204 + ECD_02558 0.44 +0.3
2,670,204 + ECD_02558 0.44 -0.4
2,670,205 - ECD_02558 0.44 +1.1
2,670,256 + ECD_02558 0.49 -0.1
2,670,257 - ECD_02558 0.49 -1.7
2,670,257 - ECD_02558 0.49 -0.7
2,670,311 - ECD_02558 0.55 +0.1
2,670,311 - ECD_02558 0.55 -1.4
2,670,370 + ECD_02558 0.61 -0.7
2,670,371 - ECD_02558 0.61 +0.5
2,670,371 - ECD_02558 0.61 -1.2
2,670,483 + ECD_02558 0.73 -0.3
2,670,483 + ECD_02558 0.73 +0.8
2,670,483 + ECD_02558 0.73 -2.1
2,670,484 - ECD_02558 0.73 -0.5
2,670,504 + ECD_02558 0.75 +0.7
2,670,504 + ECD_02558 0.75 +1.1
2,670,504 + ECD_02558 0.75 +1.2
2,670,504 + ECD_02558 0.75 -2.2
2,670,504 + ECD_02558 0.75 +0.9
2,670,505 - ECD_02558 0.75 -0.5
2,670,532 - ECD_02558 0.78 +1.7
2,670,532 - ECD_02558 0.78 +0.3
2,670,708 + -1.1
2,670,709 - -2.1
2,670,739 + +0.4
2,670,739 + +0.8
2,670,740 - -0.9
2,670,740 - -2.2
2,670,743 + +0.3
2,670,743 + +0.3
2,670,743 + +1.1
2,670,743 + -1.8
2,670,743 + +0.7
2,670,743 + -0.8
2,670,744 - +0.7
2,670,855 + +0.1
2,670,856 - +0.2
2,671,013 - ECD_02559 0.18 -0.6
2,671,013 - ECD_02559 0.18 -0.2
2,671,026 + ECD_02559 0.19 +0.6
2,671,026 + ECD_02559 0.19 -0.2
2,671,027 - ECD_02559 0.19 -3.1
2,671,027 - ECD_02559 0.19 +0.1
2,671,027 - ECD_02559 0.19 -0.4
2,671,027 - ECD_02559 0.19 +0.5
2,671,065 - ECD_02559 0.21 -0.1
2,671,065 - ECD_02559 0.21 +0.2
2,671,065 - ECD_02559 0.21 +0.6
2,671,065 - ECD_02559 0.21 -0.2
2,671,097 - ECD_02559 0.23 -0.8
2,671,097 - ECD_02559 0.23 -1.0
2,671,097 - ECD_02559 0.23 -2.3
2,671,097 - ECD_02559 0.23 +0.2
2,671,099 + ECD_02559 0.24 +0.4
2,671,100 - ECD_02559 0.24 +0.2
2,671,100 - ECD_02559 0.24 +0.9
2,671,100 - ECD_02559 0.24 +0.2
2,671,344 - ECD_02559 0.40 +1.0
2,671,344 - ECD_02559 0.40 -0.2
2,671,344 - ECD_02559 0.40 +0.4
2,671,450 - ECD_02559 0.47 +0.2
2,671,450 - ECD_02559 0.47 -1.7
2,671,450 - ECD_02559 0.47 -0.0
2,671,464 + ECD_02559 0.48 -1.3
2,671,464 + ECD_02559 0.48 -1.5
2,671,536 - ECD_02559 0.52 +0.0
2,671,746 + ECD_02559 0.66 +1.5
2,671,747 - ECD_02559 0.66 +1.1
2,671,747 - ECD_02559 0.66 -0.3
2,671,747 - ECD_02559 0.66 +0.5
2,671,747 - ECD_02559 0.66 +0.5
2,671,964 + ECD_02559 0.81 +0.8
2,671,965 - ECD_02559 0.81 -0.2
2,671,965 - ECD_02559 0.81 -0.1
2,672,068 + ECD_02559 0.88 -0.6
2,672,068 + ECD_02559 0.88 -2.2
2,672,068 + ECD_02559 0.88 +1.8
2,672,069 - ECD_02559 0.88 -0.5
2,672,069 - ECD_02559 0.88 -0.7
2,672,069 - ECD_02559 0.88 +0.9
2,672,069 - ECD_02559 0.88 -0.0
2,672,069 - ECD_02559 0.88 +0.1
2,672,069 - ECD_02559 0.88 -0.6
2,672,069 - ECD_02559 0.88 +0.7
2,672,125 + +0.2
2,672,125 + +1.0
2,672,125 + +0.2
2,672,125 + -0.9
2,672,126 - -1.0
2,672,126 - -0.5
2,672,126 - +0.2
2,672,126 - -0.7
2,672,126 - -0.9
2,672,126 - -0.3
2,672,126 - -1.0
2,672,126 - +0.2
2,672,161 + -1.5
2,672,162 - +0.7
2,672,162 - +0.6
2,672,162 - -0.4
2,672,162 - +1.1
2,672,283 - -0.8
2,672,283 - +1.3
2,672,442 + +0.4
2,672,442 + -1.5
2,672,442 + -0.6
2,672,443 - +2.7
2,672,443 - +0.1
2,672,443 - -0.6
2,672,448 + +0.2
2,672,448 + -0.3
2,672,523 + -0.6
2,672,545 + -1.7
2,672,546 - +0.2
2,672,546 - +0.7
2,672,546 - +1.2
2,672,550 + +0.1
2,672,550 + +0.9
2,672,550 + -1.5
2,672,550 + +1.4
2,672,550 + +0.1
2,672,550 + -0.4
2,672,550 + -1.7
2,672,550 + +3.0
2,672,550 + -2.9
2,672,550 + -0.3
2,672,550 + +0.5
2,672,550 + -0.5
2,672,550 + -0.4
2,672,551 - +0.5
2,672,551 - +1.5
2,672,551 - +0.4
2,672,551 - +0.4
2,672,551 - -0.7
2,672,551 - +0.5
2,672,551 - -0.9
2,672,551 - -2.7
2,672,551 - -1.6
2,672,551 - -0.6
2,672,551 - +0.0
2,672,554 + +0.4
2,672,601 + ECD_02560 0.11 -0.6
2,672,602 - ECD_02560 0.11 +0.2
2,672,635 - ECD_02560 0.13 -0.8
2,672,662 + ECD_02560 0.15 +1.3
2,672,662 + ECD_02560 0.15 +0.6
2,672,662 + ECD_02560 0.15 -0.9
2,672,662 + ECD_02560 0.15 +1.3
2,672,663 - ECD_02560 0.15 +0.9
2,672,663 - ECD_02560 0.15 +1.7
2,672,663 - ECD_02560 0.15 +1.0
2,672,663 - ECD_02560 0.15 -0.8
2,672,663 - ECD_02560 0.15 +1.5
2,672,673 + ECD_02560 0.16 -1.4
2,672,674 - ECD_02560 0.16 +0.4
2,672,734 - ECD_02560 0.20 +0.8
2,672,743 + ECD_02560 0.21 -0.5
2,672,743 + ECD_02560 0.21 +0.9
2,672,743 + ECD_02560 0.21 -0.9
2,672,743 + ECD_02560 0.21 -0.4
2,672,743 + ECD_02560 0.21 -0.2
2,672,744 - ECD_02560 0.21 -0.1
2,672,744 - ECD_02560 0.21 +0.3
2,672,744 - ECD_02560 0.21 -0.8
2,672,744 - ECD_02560 0.21 -0.6
2,672,744 - ECD_02560 0.21 -1.2
2,672,748 + ECD_02560 0.21 -2.6
2,672,748 + ECD_02560 0.21 +0.9
2,672,748 + ECD_02560 0.21 +0.2
2,672,749 - ECD_02560 0.21 -0.8
2,672,772 - ECD_02560 0.23 +0.7
2,672,772 - ECD_02560 0.23 -0.8
2,672,805 + ECD_02560 0.25 -2.2
2,672,805 + ECD_02560 0.25 -0.6
2,672,806 - ECD_02560 0.25 +1.1
2,672,905 + ECD_02560 0.32 +0.4
2,672,905 + ECD_02560 0.32 -2.0
2,672,905 + ECD_02560 0.32 +1.1
2,672,905 + ECD_02560 0.32 -0.1
2,672,905 + ECD_02560 0.32 -0.4
2,672,905 + ECD_02560 0.32 -1.7
2,672,906 - ECD_02560 0.32 +0.3
2,672,956 + ECD_02560 0.36 -0.1
2,672,956 + ECD_02560 0.36 +0.3
2,672,956 + ECD_02560 0.36 +1.0
2,672,956 + ECD_02560 0.36 +1.6
2,672,957 - ECD_02560 0.36 -1.1
2,672,957 - ECD_02560 0.36 +0.4
2,672,957 - ECD_02560 0.36 +0.4
2,672,957 - ECD_02560 0.36 +0.2
2,673,025 + ECD_02560 0.40 +0.8
2,673,026 - ECD_02560 0.40 +0.6
2,673,026 - ECD_02560 0.40 -0.3
2,673,059 + ECD_02560 0.43 -0.5
2,673,090 + ECD_02560 0.45 -0.3
2,673,091 - ECD_02560 0.45 +0.8
2,673,095 + ECD_02560 0.45 +0.1
2,673,096 - ECD_02560 0.45 -1.6
2,673,110 + ECD_02560 0.46 -0.9
2,673,131 + ECD_02560 0.48 +0.9
2,673,166 + ECD_02560 0.50 +1.1
2,673,231 + ECD_02560 0.55 +1.2

Or see this region's nucleotide sequence