Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02332 and ECD_02333 are separated by 206 nucleotides ECD_02333 and ECD_02334 overlap by 14 nucleotides ECD_02334 and ECD_02335 are separated by 213 nucleotides
ECD_02332: ECD_02332 - RpoE-regulated lipoprotein, at 2,421,675 to 2,422,250
_02332
ECD_02333: ECD_02333 - inner membrane protein, at 2,422,457 to 2,422,906
_02333
ECD_02334: ECD_02334 - GNAT family putative N-acetyltransferase, at 2,422,893 to 2,423,318
_02334
ECD_02335: ECD_02335 - N-acetylmuramoyl-l-alanine amidase I, at 2,423,532 to 2,424,401
_02335
Position (kb)
2422
2423
2424 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2422.179 kb on - strand, within ECD_02332 at 2422.179 kb on - strand, within ECD_02332 at 2422.228 kb on - strand at 2422.228 kb on - strand at 2422.274 kb on - strand at 2422.382 kb on - strand at 2422.632 kb on + strand, within ECD_02333 at 2422.638 kb on - strand, within ECD_02333 at 2422.638 kb on - strand, within ECD_02333 at 2422.826 kb on + strand, within ECD_02333 at 2422.827 kb on - strand, within ECD_02333 at 2422.966 kb on + strand, within ECD_02334 at 2423.107 kb on + strand, within ECD_02334 at 2423.108 kb on - strand, within ECD_02334 at 2423.108 kb on - strand, within ECD_02334 at 2423.108 kb on - strand, within ECD_02334 at 2423.210 kb on + strand, within ECD_02334 at 2423.211 kb on - strand, within ECD_02334 at 2423.311 kb on - strand at 2423.322 kb on - strand at 2423.496 kb on + strand at 2423.518 kb on - strand at 2423.552 kb on - strand at 2423.897 kb on + strand, within ECD_02335 at 2423.999 kb on + strand, within ECD_02335 at 2424.015 kb on + strand, within ECD_02335 at 2424.015 kb on + strand, within ECD_02335 at 2424.015 kb on + strand, within ECD_02335 at 2424.126 kb on - strand, within ECD_02335 at 2424.296 kb on - strand, within ECD_02335
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 2,422,179 - ECD_02332 0.88 -0.2 2,422,179 - ECD_02332 0.88 +0.2 2,422,228 - -0.5 2,422,228 - -1.3 2,422,274 - +0.9 2,422,382 - +0.4 2,422,632 + ECD_02333 0.39 +0.3 2,422,638 - ECD_02333 0.40 -0.8 2,422,638 - ECD_02333 0.40 -2.7 2,422,826 + ECD_02333 0.82 +0.8 2,422,827 - ECD_02333 0.82 -1.0 2,422,966 + ECD_02334 0.17 -1.6 2,423,107 + ECD_02334 0.50 +2.7 2,423,108 - ECD_02334 0.50 +0.3 2,423,108 - ECD_02334 0.50 +0.2 2,423,108 - ECD_02334 0.50 -0.8 2,423,210 + ECD_02334 0.74 +1.6 2,423,211 - ECD_02334 0.75 -0.2 2,423,311 - +0.5 2,423,322 - -0.6 2,423,496 + +0.7 2,423,518 - -1.1 2,423,552 - -0.8 2,423,897 + ECD_02335 0.42 +1.2 2,423,999 + ECD_02335 0.54 +1.3 2,424,015 + ECD_02335 0.56 -0.0 2,424,015 + ECD_02335 0.56 -1.8 2,424,015 + ECD_02335 0.56 -0.6 2,424,126 - ECD_02335 0.68 -0.7 2,424,296 - ECD_02335 0.88 -1.1
Or see this region's nucleotide sequence