Strain Fitness in Escherichia coli BL21 around ECD_02243

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02241 and ECD_02242 are separated by 155 nucleotidesECD_02242 and ECD_02243 are separated by 82 nucleotidesECD_02243 and ECD_02244 overlap by 1 nucleotides ECD_02241: ECD_02241 - acetyl-CoA carboxylase, beta (carboxyltransferase) subunit, at 2,320,265 to 2,321,179 _02241 ECD_02242: ECD_02242 - DedA family inner membrane protein, at 2,321,335 to 2,321,994 _02242 ECD_02243: ECD_02243 - tRNA pseudouridine(38-40) synthase, at 2,322,077 to 2,322,889 _02243 ECD_02244: ECD_02244 - putative semialdehyde dehydrogenase, at 2,322,889 to 2,323,902 _02244 Position (kb) 2322 2323Strain fitness (log2 ratio) -3 -2 -1 0 1at 2321.410 kb on - strand, within ECD_02242at 2321.431 kb on - strand, within ECD_02242at 2321.518 kb on - strand, within ECD_02242at 2321.520 kb on - strand, within ECD_02242at 2321.779 kb on - strand, within ECD_02242at 2321.779 kb on - strand, within ECD_02242at 2322.012 kb on - strandat 2322.032 kb on + strandat 2322.033 kb on - strandat 2322.070 kb on - strandat 2322.272 kb on - strand, within ECD_02243at 2322.284 kb on - strand, within ECD_02243at 2322.325 kb on - strand, within ECD_02243at 2322.532 kb on - strand, within ECD_02243at 2322.582 kb on - strand, within ECD_02243at 2322.894 kb on - strandat 2323.055 kb on - strand, within ECD_02244at 2323.093 kb on - strand, within ECD_02244at 2323.179 kb on - strand, within ECD_02244at 2323.184 kb on - strand, within ECD_02244at 2323.279 kb on - strand, within ECD_02244at 2323.279 kb on - strand, within ECD_02244at 2323.447 kb on - strand, within ECD_02244at 2323.565 kb on - strand, within ECD_02244

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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2,321,410 - ECD_02242 0.11 +0.1
2,321,431 - ECD_02242 0.15 +0.0
2,321,518 - ECD_02242 0.28 +1.4
2,321,520 - ECD_02242 0.28 -0.0
2,321,779 - ECD_02242 0.67 +0.2
2,321,779 - ECD_02242 0.67 -1.7
2,322,012 - -0.1
2,322,032 + -0.5
2,322,033 - -0.2
2,322,070 - +0.8
2,322,272 - ECD_02243 0.24 +0.7
2,322,284 - ECD_02243 0.25 +0.7
2,322,325 - ECD_02243 0.31 +0.7
2,322,532 - ECD_02243 0.56 -1.2
2,322,582 - ECD_02243 0.62 -0.3
2,322,894 - -2.9
2,323,055 - ECD_02244 0.16 -0.2
2,323,093 - ECD_02244 0.20 -0.5
2,323,179 - ECD_02244 0.29 +0.0
2,323,184 - ECD_02244 0.29 -1.0
2,323,279 - ECD_02244 0.38 -1.0
2,323,279 - ECD_02244 0.38 -1.1
2,323,447 - ECD_02244 0.55 -3.2
2,323,565 - ECD_02244 0.67 +0.2

Or see this region's nucleotide sequence