Strain Fitness in Escherichia coli BL21 around ECD_02139

Experiment: Bas24

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02138 and ECD_02139 are separated by 75 nucleotidesECD_02139 and ECD_02140 overlap by 1 nucleotides ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380 _02138 ECD_02139: ECD_02139 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, at 2,202,456 to 2,203,106 _02139 ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170 _02140 Position (kb) 2202 2203 2204Strain fitness (log2 ratio) -2 -1 0 1at 2201.553 kb on - strand, within ECD_02138at 2201.682 kb on - strand, within ECD_02138at 2201.709 kb on - strand, within ECD_02138at 2201.709 kb on - strand, within ECD_02138at 2201.741 kb on - strand, within ECD_02138at 2201.741 kb on - strand, within ECD_02138at 2201.741 kb on - strand, within ECD_02138at 2201.759 kb on - strand, within ECD_02138at 2201.859 kb on - strand, within ECD_02138at 2201.867 kb on - strand, within ECD_02138at 2201.959 kb on + strand, within ECD_02138at 2202.030 kb on - strand, within ECD_02138at 2202.208 kb on - strand, within ECD_02138at 2202.208 kb on - strand, within ECD_02138at 2202.367 kb on - strandat 2202.657 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.941 kb on + strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.942 kb on - strand, within ECD_02139at 2202.996 kb on - strand, within ECD_02139at 2203.214 kb on + strand, within ECD_02140at 2203.215 kb on - strand, within ECD_02140at 2203.215 kb on - strand, within ECD_02140at 2203.674 kb on + strand, within ECD_02140at 2203.823 kb on + strand, within ECD_02140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
remove
2,201,553 - ECD_02138 0.50 +0.8
2,201,682 - ECD_02138 0.57 -1.7
2,201,709 - ECD_02138 0.59 -0.2
2,201,709 - ECD_02138 0.59 -0.1
2,201,741 - ECD_02138 0.61 -1.9
2,201,741 - ECD_02138 0.61 +0.6
2,201,741 - ECD_02138 0.61 -0.5
2,201,759 - ECD_02138 0.62 +0.7
2,201,859 - ECD_02138 0.68 +0.5
2,201,867 - ECD_02138 0.69 +0.3
2,201,959 + ECD_02138 0.74 -0.2
2,202,030 - ECD_02138 0.79 +0.8
2,202,208 - ECD_02138 0.89 +0.6
2,202,208 - ECD_02138 0.89 +0.1
2,202,367 - +0.5
2,202,657 + ECD_02139 0.31 +1.2
2,202,941 + ECD_02139 0.75 -0.5
2,202,941 + ECD_02139 0.75 -0.0
2,202,941 + ECD_02139 0.75 -0.4
2,202,941 + ECD_02139 0.75 -1.1
2,202,942 - ECD_02139 0.75 +0.6
2,202,942 - ECD_02139 0.75 -0.2
2,202,942 - ECD_02139 0.75 -1.1
2,202,942 - ECD_02139 0.75 -0.4
2,202,942 - ECD_02139 0.75 +1.0
2,202,942 - ECD_02139 0.75 +1.6
2,202,942 - ECD_02139 0.75 -0.4
2,202,942 - ECD_02139 0.75 -0.1
2,202,942 - ECD_02139 0.75 +0.3
2,202,942 - ECD_02139 0.75 -0.6
2,202,942 - ECD_02139 0.75 -1.5
2,202,942 - ECD_02139 0.75 +0.4
2,202,996 - ECD_02139 0.83 -1.7
2,203,214 + ECD_02140 0.10 -0.3
2,203,215 - ECD_02140 0.10 -0.4
2,203,215 - ECD_02140 0.10 +0.4
2,203,674 + ECD_02140 0.53 +0.9
2,203,823 + ECD_02140 0.67 -0.1

Or see this region's nucleotide sequence