Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02138 and ECD_02139 are separated by 75 nucleotides ECD_02139 and ECD_02140 overlap by 1 nucleotides
ECD_02138: ECD_02138 - microcin J25 efflux ABC transporter permease/ATPase, at 2,200,737 to 2,202,380
_02138
ECD_02139: ECD_02139 - oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions, at 2,202,456 to 2,203,106
_02139
ECD_02140: ECD_02140 - fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase, at 2,203,106 to 2,204,170
_02140
Position (kb)
2202
2203
2204 Strain fitness (log2 ratio)
-2
-1
0
1 at 2201.553 kb on - strand, within ECD_02138 at 2201.682 kb on - strand, within ECD_02138 at 2201.709 kb on - strand, within ECD_02138 at 2201.709 kb on - strand, within ECD_02138 at 2201.741 kb on - strand, within ECD_02138 at 2201.741 kb on - strand, within ECD_02138 at 2201.741 kb on - strand, within ECD_02138 at 2201.759 kb on - strand, within ECD_02138 at 2201.859 kb on - strand, within ECD_02138 at 2201.867 kb on - strand, within ECD_02138 at 2201.959 kb on + strand, within ECD_02138 at 2202.030 kb on - strand, within ECD_02138 at 2202.208 kb on - strand, within ECD_02138 at 2202.208 kb on - strand, within ECD_02138 at 2202.367 kb on - strand at 2202.657 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.941 kb on + strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.942 kb on - strand, within ECD_02139 at 2202.996 kb on - strand, within ECD_02139 at 2203.214 kb on + strand, within ECD_02140 at 2203.215 kb on - strand, within ECD_02140 at 2203.215 kb on - strand, within ECD_02140 at 2203.674 kb on + strand, within ECD_02140 at 2203.823 kb on + strand, within ECD_02140
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 2,201,553 - ECD_02138 0.50 +0.8 2,201,682 - ECD_02138 0.57 -1.7 2,201,709 - ECD_02138 0.59 -0.2 2,201,709 - ECD_02138 0.59 -0.1 2,201,741 - ECD_02138 0.61 -1.9 2,201,741 - ECD_02138 0.61 +0.6 2,201,741 - ECD_02138 0.61 -0.5 2,201,759 - ECD_02138 0.62 +0.7 2,201,859 - ECD_02138 0.68 +0.5 2,201,867 - ECD_02138 0.69 +0.3 2,201,959 + ECD_02138 0.74 -0.2 2,202,030 - ECD_02138 0.79 +0.8 2,202,208 - ECD_02138 0.89 +0.6 2,202,208 - ECD_02138 0.89 +0.1 2,202,367 - +0.5 2,202,657 + ECD_02139 0.31 +1.2 2,202,941 + ECD_02139 0.75 -0.5 2,202,941 + ECD_02139 0.75 -0.0 2,202,941 + ECD_02139 0.75 -0.4 2,202,941 + ECD_02139 0.75 -1.1 2,202,942 - ECD_02139 0.75 +0.6 2,202,942 - ECD_02139 0.75 -0.2 2,202,942 - ECD_02139 0.75 -1.1 2,202,942 - ECD_02139 0.75 -0.4 2,202,942 - ECD_02139 0.75 +1.0 2,202,942 - ECD_02139 0.75 +1.6 2,202,942 - ECD_02139 0.75 -0.4 2,202,942 - ECD_02139 0.75 -0.1 2,202,942 - ECD_02139 0.75 +0.3 2,202,942 - ECD_02139 0.75 -0.6 2,202,942 - ECD_02139 0.75 -1.5 2,202,942 - ECD_02139 0.75 +0.4 2,202,996 - ECD_02139 0.83 -1.7 2,203,214 + ECD_02140 0.10 -0.3 2,203,215 - ECD_02140 0.10 -0.4 2,203,215 - ECD_02140 0.10 +0.4 2,203,674 + ECD_02140 0.53 +0.9 2,203,823 + ECD_02140 0.67 -0.1
Or see this region's nucleotide sequence