Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01175 and ECD_01176 are separated by 227 nucleotides ECD_01176 and ECD_01177 are separated by 99 nucleotides
ECD_01175: ECD_01175 - dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit, at 1,237,916 to 1,238,986
_01175
ECD_01176: ECD_01176 - dhaKLM operon transcription activator, at 1,239,214 to 1,241,133
_01176
ECD_01177: ECD_01177 - putative adhesin, at 1,241,233 to 1,244,100
_01177
Position (kb)
1239
1240
1241
1242 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1238.453 kb on - strand, within ECD_01175 at 1238.631 kb on - strand, within ECD_01175 at 1239.005 kb on - strand at 1239.285 kb on + strand at 1239.360 kb on + strand at 1239.414 kb on + strand, within ECD_01176 at 1239.414 kb on + strand, within ECD_01176 at 1239.503 kb on + strand, within ECD_01176 at 1239.532 kb on + strand, within ECD_01176 at 1239.555 kb on + strand, within ECD_01176 at 1239.579 kb on + strand, within ECD_01176 at 1240.191 kb on + strand, within ECD_01176 at 1240.348 kb on + strand, within ECD_01176 at 1240.370 kb on + strand, within ECD_01176 at 1240.372 kb on + strand, within ECD_01176 at 1241.001 kb on + strand at 1241.542 kb on + strand, within ECD_01177 at 1241.543 kb on - strand, within ECD_01177 at 1241.569 kb on - strand, within ECD_01177 at 1241.596 kb on - strand, within ECD_01177 at 1241.619 kb on - strand, within ECD_01177 at 1241.895 kb on - strand, within ECD_01177 at 1241.906 kb on - strand, within ECD_01177 at 1241.906 kb on - strand, within ECD_01177
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 1,238,453 - ECD_01175 0.50 -0.2 1,238,631 - ECD_01175 0.67 +0.2 1,239,005 - +0.2 1,239,285 + +0.9 1,239,360 + -0.5 1,239,414 + ECD_01176 0.10 -1.9 1,239,414 + ECD_01176 0.10 -0.3 1,239,503 + ECD_01176 0.15 -0.4 1,239,532 + ECD_01176 0.17 -1.3 1,239,555 + ECD_01176 0.18 -1.1 1,239,579 + ECD_01176 0.19 -0.4 1,240,191 + ECD_01176 0.51 -0.2 1,240,348 + ECD_01176 0.59 -2.2 1,240,370 + ECD_01176 0.60 -0.0 1,240,372 + ECD_01176 0.60 -1.1 1,241,001 + -1.7 1,241,542 + ECD_01177 0.11 -2.8 1,241,543 - ECD_01177 0.11 -2.1 1,241,569 - ECD_01177 0.12 +1.0 1,241,596 - ECD_01177 0.13 +2.6 1,241,619 - ECD_01177 0.13 +1.7 1,241,895 - ECD_01177 0.23 +0.1 1,241,906 - ECD_01177 0.23 -1.5 1,241,906 - ECD_01177 0.23 +0.5
Or see this region's nucleotide sequence