Strain Fitness in Escherichia coli BL21 around ECD_01055

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01052 and ECD_01053 are separated by 3 nucleotidesECD_01053 and ECD_01054 are separated by 260 nucleotidesECD_01054 and ECD_01055 are separated by 20 nucleotidesECD_01055 and ECD_01056 are separated by 114 nucleotidesECD_01056 and ECD_01057 are separated by 289 nucleotidesECD_01057 and ECD_01058 are separated by 73 nucleotides ECD_01052: ECD_01052 - periplasmic high pH-inducible lipid-binding protein, at 1,120,468 to 1,121,043 _01052 ECD_01053: ECD_01053 - putative cytochrome b561, at 1,121,047 to 1,121,613 _01053 ECD_01054: ECD_01054 - uncharacterized protein, at 1,121,874 to 1,122,014 _01054 ECD_01055: ECD_01055 - N-methyltryptophan oxidase, FAD-binding, at 1,122,035 to 1,123,153 _01055 ECD_01056: ECD_01056 - biofilm regulator, at 1,123,268 to 1,123,522 _01056 ECD_01057: ECD_01057 - DNA damage-inducible protein I, at 1,123,812 to 1,124,057 _01057 ECD_01058: ECD_01058 - dihydro-orotase, at 1,124,131 to 1,125,177 _01058 Position (kb) 1122 1123 1124Strain fitness (log2 ratio) -2 -1 0 1at 1121.156 kb on - strand, within ECD_01053at 1121.322 kb on - strand, within ECD_01053at 1121.399 kb on - strand, within ECD_01053at 1121.578 kb on - strandat 1122.365 kb on - strand, within ECD_01055at 1122.609 kb on - strand, within ECD_01055at 1122.750 kb on + strand, within ECD_01055at 1122.751 kb on - strand, within ECD_01055at 1122.976 kb on - strand, within ECD_01055at 1123.270 kb on - strandat 1123.270 kb on - strandat 1123.412 kb on - strand, within ECD_01056at 1123.453 kb on - strand, within ECD_01056at 1123.453 kb on - strand, within ECD_01056at 1123.453 kb on - strand, within ECD_01056at 1123.457 kb on - strand, within ECD_01056at 1123.457 kb on - strand, within ECD_01056at 1123.547 kb on - strandat 1124.058 kb on - strandat 1124.106 kb on + strandat 1124.106 kb on + strandat 1124.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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1,121,156 - ECD_01053 0.19 -0.0
1,121,322 - ECD_01053 0.49 +0.8
1,121,399 - ECD_01053 0.62 +0.1
1,121,578 - +0.6
1,122,365 - ECD_01055 0.29 +1.3
1,122,609 - ECD_01055 0.51 +0.7
1,122,750 + ECD_01055 0.64 +0.7
1,122,751 - ECD_01055 0.64 -1.3
1,122,976 - ECD_01055 0.84 +1.4
1,123,270 - +0.9
1,123,270 - -0.7
1,123,412 - ECD_01056 0.56 +0.1
1,123,453 - ECD_01056 0.73 -0.0
1,123,453 - ECD_01056 0.73 -2.0
1,123,453 - ECD_01056 0.73 +0.1
1,123,457 - ECD_01056 0.74 -2.2
1,123,457 - ECD_01056 0.74 +0.7
1,123,547 - -0.6
1,124,058 - -0.2
1,124,106 + +1.2
1,124,106 + +0.4
1,124,106 + -0.1

Or see this region's nucleotide sequence