Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01052 and ECD_01053 are separated by 3 nucleotides ECD_01053 and ECD_01054 are separated by 260 nucleotides ECD_01054 and ECD_01055 are separated by 20 nucleotides ECD_01055 and ECD_01056 are separated by 114 nucleotides ECD_01056 and ECD_01057 are separated by 289 nucleotides ECD_01057 and ECD_01058 are separated by 73 nucleotides
ECD_01052: ECD_01052 - periplasmic high pH-inducible lipid-binding protein, at 1,120,468 to 1,121,043
_01052
ECD_01053: ECD_01053 - putative cytochrome b561, at 1,121,047 to 1,121,613
_01053
ECD_01054: ECD_01054 - uncharacterized protein, at 1,121,874 to 1,122,014
_01054
ECD_01055: ECD_01055 - N-methyltryptophan oxidase, FAD-binding, at 1,122,035 to 1,123,153
_01055
ECD_01056: ECD_01056 - biofilm regulator, at 1,123,268 to 1,123,522
_01056
ECD_01057: ECD_01057 - DNA damage-inducible protein I, at 1,123,812 to 1,124,057
_01057
ECD_01058: ECD_01058 - dihydro-orotase, at 1,124,131 to 1,125,177
_01058
Position (kb)
1122
1123
1124 Strain fitness (log2 ratio)
-2
-1
0
1 at 1121.156 kb on - strand, within ECD_01053 at 1121.322 kb on - strand, within ECD_01053 at 1121.399 kb on - strand, within ECD_01053 at 1121.578 kb on - strand at 1122.365 kb on - strand, within ECD_01055 at 1122.609 kb on - strand, within ECD_01055 at 1122.750 kb on + strand, within ECD_01055 at 1122.751 kb on - strand, within ECD_01055 at 1122.976 kb on - strand, within ECD_01055 at 1123.270 kb on - strand at 1123.270 kb on - strand at 1123.412 kb on - strand, within ECD_01056 at 1123.453 kb on - strand, within ECD_01056 at 1123.453 kb on - strand, within ECD_01056 at 1123.453 kb on - strand, within ECD_01056 at 1123.457 kb on - strand, within ECD_01056 at 1123.457 kb on - strand, within ECD_01056 at 1123.547 kb on - strand at 1124.058 kb on - strand at 1124.106 kb on + strand at 1124.106 kb on + strand at 1124.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 1,121,156 - ECD_01053 0.19 -0.0 1,121,322 - ECD_01053 0.49 +0.8 1,121,399 - ECD_01053 0.62 +0.1 1,121,578 - +0.6 1,122,365 - ECD_01055 0.29 +1.3 1,122,609 - ECD_01055 0.51 +0.7 1,122,750 + ECD_01055 0.64 +0.7 1,122,751 - ECD_01055 0.64 -1.3 1,122,976 - ECD_01055 0.84 +1.4 1,123,270 - +0.9 1,123,270 - -0.7 1,123,412 - ECD_01056 0.56 +0.1 1,123,453 - ECD_01056 0.73 -0.0 1,123,453 - ECD_01056 0.73 -2.0 1,123,453 - ECD_01056 0.73 +0.1 1,123,457 - ECD_01056 0.74 -2.2 1,123,457 - ECD_01056 0.74 +0.7 1,123,547 - -0.6 1,124,058 - -0.2 1,124,106 + +1.2 1,124,106 + +0.4 1,124,106 + -0.1
Or see this region's nucleotide sequence