Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00907 and ECD_00908 are separated by 54 nucleotides ECD_00908 and ECD_00909 are separated by 404 nucleotides
ECD_00907: ECD_00907 - formate C-acetyltransferase 1, anaerobic; pyruvate formate-lyase 1, at 956,363 to 958,645
_00907
ECD_00908: ECD_00908 - formate channel, at 958,700 to 959,557
_00908
ECD_00909: ECD_00909 - ribosomal protein S12 methylthiotransferase accessory factor, at 959,962 to 961,722
_00909
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 957.787 kb on - strand, within ECD_00907 at 957.845 kb on - strand, within ECD_00907 at 957.867 kb on + strand, within ECD_00907 at 957.868 kb on - strand, within ECD_00907 at 957.868 kb on - strand, within ECD_00907 at 958.129 kb on - strand, within ECD_00907 at 958.129 kb on - strand, within ECD_00907 at 958.316 kb on - strand, within ECD_00907 at 958.380 kb on + strand, within ECD_00907 at 958.473 kb on - strand at 958.648 kb on - strand at 958.655 kb on - strand at 958.655 kb on - strand at 958.726 kb on - strand at 958.738 kb on - strand at 958.738 kb on - strand at 958.912 kb on + strand, within ECD_00908 at 958.913 kb on - strand, within ECD_00908 at 958.913 kb on - strand, within ECD_00908 at 958.976 kb on - strand, within ECD_00908 at 959.033 kb on + strand, within ECD_00908 at 959.034 kb on - strand, within ECD_00908 at 959.144 kb on - strand, within ECD_00908 at 959.145 kb on + strand, within ECD_00908 at 959.145 kb on + strand, within ECD_00908 at 959.146 kb on - strand, within ECD_00908 at 959.166 kb on - strand, within ECD_00908 at 959.166 kb on - strand, within ECD_00908 at 959.178 kb on - strand, within ECD_00908 at 959.288 kb on - strand, within ECD_00908 at 959.404 kb on - strand, within ECD_00908 at 959.404 kb on - strand, within ECD_00908 at 959.404 kb on - strand, within ECD_00908 at 960.190 kb on + strand, within ECD_00909 at 960.215 kb on + strand, within ECD_00909 at 960.239 kb on - strand, within ECD_00909 at 960.239 kb on - strand, within ECD_00909 at 960.345 kb on - strand, within ECD_00909 at 960.444 kb on - strand, within ECD_00909
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 957,787 - ECD_00907 0.62 -0.7 957,845 - ECD_00907 0.65 -0.2 957,867 + ECD_00907 0.66 +1.0 957,868 - ECD_00907 0.66 -0.2 957,868 - ECD_00907 0.66 +0.2 958,129 - ECD_00907 0.77 +2.1 958,129 - ECD_00907 0.77 -2.9 958,316 - ECD_00907 0.86 -0.9 958,380 + ECD_00907 0.88 -2.2 958,473 - +1.3 958,648 - -1.2 958,655 - +0.7 958,655 - +1.2 958,726 - -0.2 958,738 - -2.4 958,738 - +0.0 958,912 + ECD_00908 0.25 +1.3 958,913 - ECD_00908 0.25 -0.7 958,913 - ECD_00908 0.25 -1.4 958,976 - ECD_00908 0.32 -0.6 959,033 + ECD_00908 0.39 +1.2 959,034 - ECD_00908 0.39 +0.6 959,144 - ECD_00908 0.52 +0.4 959,145 + ECD_00908 0.52 +0.6 959,145 + ECD_00908 0.52 +0.1 959,146 - ECD_00908 0.52 -1.8 959,166 - ECD_00908 0.54 -0.1 959,166 - ECD_00908 0.54 +0.2 959,178 - ECD_00908 0.56 +0.4 959,288 - ECD_00908 0.69 -1.7 959,404 - ECD_00908 0.82 -1.3 959,404 - ECD_00908 0.82 -0.3 959,404 - ECD_00908 0.82 -1.0 960,190 + ECD_00909 0.13 +0.6 960,215 + ECD_00909 0.14 +0.2 960,239 - ECD_00909 0.16 +1.7 960,239 - ECD_00909 0.16 +1.0 960,345 - ECD_00909 0.22 +1.1 960,444 - ECD_00909 0.27 +0.1
Or see this region's nucleotide sequence