Experiment: Bas24
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00904 and ECD_00905 are separated by 99 nucleotides ECD_00905 and ECD_00906 are separated by 81 nucleotides ECD_00906 and ECD_00907 are separated by 191 nucleotides
ECD_00904: ECD_00904 - LysR family putative transcriptional regulator, at 953,751 to 954,659
_00904
ECD_00905: ECD_00905 - putative NAD(P)H-dependent oxidoreductase, at 954,759 to 955,349
_00905
ECD_00906: ECD_00906 - pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL activase, at 955,431 to 956,171
_00906
ECD_00907: ECD_00907 - formate C-acetyltransferase 1, anaerobic; pyruvate formate-lyase 1, at 956,363 to 958,645
_00907
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.545 kb on + strand, within ECD_00904 at 954.753 kb on - strand at 954.821 kb on + strand, within ECD_00905 at 955.345 kb on + strand at 956.266 kb on - strand at 956.269 kb on + strand at 956.270 kb on - strand at 956.270 kb on - strand at 956.270 kb on - strand at 956.270 kb on - strand at 956.365 kb on - strand at 956.368 kb on + strand at 956.809 kb on - strand, within ECD_00907 at 956.809 kb on - strand, within ECD_00907 at 956.925 kb on - strand, within ECD_00907 at 956.925 kb on - strand, within ECD_00907 at 957.010 kb on + strand, within ECD_00907 at 957.022 kb on - strand, within ECD_00907 at 957.132 kb on + strand, within ECD_00907 at 957.133 kb on - strand, within ECD_00907 at 957.148 kb on - strand, within ECD_00907
Per-strain Table
Position Strand Gene LocusTag Fraction Bas24 remove 954,545 + ECD_00904 0.87 +0.3 954,753 - +0.2 954,821 + ECD_00905 0.10 +2.1 955,345 + +0.2 956,266 - -0.7 956,269 + +0.1 956,270 - -1.2 956,270 - +1.1 956,270 - +0.7 956,270 - +0.9 956,365 - +0.1 956,368 + +0.5 956,809 - ECD_00907 0.20 -2.3 956,809 - ECD_00907 0.20 -0.3 956,925 - ECD_00907 0.25 +0.0 956,925 - ECD_00907 0.25 -0.1 957,010 + ECD_00907 0.28 +0.4 957,022 - ECD_00907 0.29 +1.4 957,132 + ECD_00907 0.34 -0.1 957,133 - ECD_00907 0.34 +0.5 957,148 - ECD_00907 0.34 -0.2
Or see this region's nucleotide sequence