Strain Fitness in Escherichia coli BL21 around ECD_00074

Experiment: Bas24

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00072 and ECD_00073 are separated by 48 nucleotidesECD_00073 and ECD_00074 are separated by 10 nucleotidesECD_00074 and ECD_00075 are separated by 2 nucleotides ECD_00072: ECD_00072 - broad specificity sugar efflux system, at 80,426 to 81,604 _00072 ECD_00073: ECD_00073 - 3-isopropylmalate dehydratase small subunit, at 81,653 to 82,258 _00073 ECD_00074: ECD_00074 - 3-isopropylmalate dehydratase large subunit, at 82,269 to 83,669 _00074 ECD_00075: ECD_00075 - 3-isopropylmalate dehydrogenase, NAD(+)-dependent, at 83,672 to 84,763 _00075 Position (kb) 82 83 84Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 81.282 kb on + strand, within ECD_00072at 81.309 kb on - strand, within ECD_00072at 81.373 kb on - strand, within ECD_00072at 81.405 kb on + strand, within ECD_00072at 81.405 kb on + strand, within ECD_00072at 81.406 kb on - strand, within ECD_00072at 81.454 kb on - strand, within ECD_00072at 81.458 kb on - strand, within ECD_00072at 81.466 kb on + strand, within ECD_00072at 81.467 kb on - strand, within ECD_00072at 81.539 kb on + strandat 81.655 kb on - strandat 81.715 kb on + strand, within ECD_00073at 81.919 kb on + strand, within ECD_00073at 81.964 kb on + strand, within ECD_00073at 81.965 kb on - strand, within ECD_00073at 82.275 kb on - strandat 82.525 kb on - strand, within ECD_00074at 82.696 kb on + strand, within ECD_00074at 82.696 kb on + strand, within ECD_00074at 82.696 kb on + strand, within ECD_00074at 82.696 kb on + strand, within ECD_00074at 82.696 kb on + strand, within ECD_00074at 82.696 kb on + strand, within ECD_00074at 82.697 kb on - strand, within ECD_00074at 82.697 kb on - strand, within ECD_00074at 82.760 kb on + strand, within ECD_00074at 82.949 kb on + strand, within ECD_00074at 82.949 kb on + strand, within ECD_00074at 82.949 kb on + strand, within ECD_00074at 82.949 kb on + strand, within ECD_00074at 82.949 kb on + strand, within ECD_00074at 82.950 kb on - strand, within ECD_00074at 82.950 kb on - strand, within ECD_00074at 82.950 kb on - strand, within ECD_00074at 83.021 kb on + strand, within ECD_00074at 83.037 kb on + strand, within ECD_00074at 83.038 kb on - strand, within ECD_00074at 83.038 kb on - strand, within ECD_00074at 83.038 kb on - strand, within ECD_00074at 83.135 kb on + strand, within ECD_00074at 83.214 kb on + strand, within ECD_00074at 83.340 kb on + strand, within ECD_00074at 83.341 kb on - strand, within ECD_00074at 83.341 kb on - strand, within ECD_00074at 83.591 kb on + strandat 83.592 kb on - strandat 83.593 kb on + strandat 83.593 kb on + strandat 83.593 kb on + strandat 83.594 kb on - strandat 83.594 kb on - strandat 83.595 kb on + strandat 83.596 kb on - strandat 83.596 kb on - strandat 83.596 kb on - strandat 83.655 kb on + strandat 83.674 kb on - strandat 83.674 kb on - strandat 83.691 kb on + strandat 83.925 kb on + strand, within ECD_00075at 83.925 kb on + strand, within ECD_00075at 83.926 kb on - strand, within ECD_00075at 83.926 kb on - strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.090 kb on + strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.091 kb on - strand, within ECD_00075at 84.094 kb on + strand, within ECD_00075at 84.094 kb on + strand, within ECD_00075at 84.095 kb on - strand, within ECD_00075at 84.095 kb on - strand, within ECD_00075at 84.095 kb on - strand, within ECD_00075at 84.241 kb on + strand, within ECD_00075at 84.264 kb on + strand, within ECD_00075at 84.264 kb on + strand, within ECD_00075at 84.265 kb on - strand, within ECD_00075at 84.330 kb on + strand, within ECD_00075at 84.330 kb on + strand, within ECD_00075at 84.330 kb on + strand, within ECD_00075at 84.513 kb on - strand, within ECD_00075at 84.513 kb on - strand, within ECD_00075at 84.629 kb on + strand, within ECD_00075at 84.637 kb on - strand, within ECD_00075

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas24
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81,282 + ECD_00072 0.73 -0.8
81,309 - ECD_00072 0.75 +0.6
81,373 - ECD_00072 0.80 +2.8
81,405 + ECD_00072 0.83 -1.3
81,405 + ECD_00072 0.83 -1.4
81,406 - ECD_00072 0.83 -0.7
81,454 - ECD_00072 0.87 -3.2
81,458 - ECD_00072 0.88 -0.5
81,466 + ECD_00072 0.88 -0.4
81,467 - ECD_00072 0.88 +0.2
81,539 + -3.3
81,655 - -0.2
81,715 + ECD_00073 0.10 -0.4
81,919 + ECD_00073 0.44 +1.1
81,964 + ECD_00073 0.51 -0.1
81,965 - ECD_00073 0.51 +1.2
82,275 - -0.0
82,525 - ECD_00074 0.18 -0.1
82,696 + ECD_00074 0.30 +0.2
82,696 + ECD_00074 0.30 +0.3
82,696 + ECD_00074 0.30 +0.1
82,696 + ECD_00074 0.30 -1.4
82,696 + ECD_00074 0.30 -0.1
82,696 + ECD_00074 0.30 +0.5
82,697 - ECD_00074 0.31 +0.5
82,697 - ECD_00074 0.31 -0.7
82,760 + ECD_00074 0.35 +0.0
82,949 + ECD_00074 0.49 +0.2
82,949 + ECD_00074 0.49 +0.9
82,949 + ECD_00074 0.49 +0.4
82,949 + ECD_00074 0.49 -1.2
82,949 + ECD_00074 0.49 +0.0
82,950 - ECD_00074 0.49 +1.6
82,950 - ECD_00074 0.49 +0.1
82,950 - ECD_00074 0.49 +0.1
83,021 + ECD_00074 0.54 +0.5
83,037 + ECD_00074 0.55 -1.4
83,038 - ECD_00074 0.55 +0.2
83,038 - ECD_00074 0.55 -0.4
83,038 - ECD_00074 0.55 +0.9
83,135 + ECD_00074 0.62 +1.1
83,214 + ECD_00074 0.67 -0.3
83,340 + ECD_00074 0.76 -0.1
83,341 - ECD_00074 0.77 -1.3
83,341 - ECD_00074 0.77 -1.9
83,591 + -0.3
83,592 - +0.8
83,593 + -0.8
83,593 + -0.5
83,593 + +0.6
83,594 - +0.6
83,594 - +0.0
83,595 + -1.4
83,596 - +0.1
83,596 - +1.0
83,596 - +0.0
83,655 + -0.4
83,674 - +1.3
83,674 - -0.9
83,691 + -2.8
83,925 + ECD_00075 0.23 -0.4
83,925 + ECD_00075 0.23 +0.1
83,926 - ECD_00075 0.23 -2.1
83,926 - ECD_00075 0.23 -0.3
84,090 + ECD_00075 0.38 +0.2
84,090 + ECD_00075 0.38 +0.0
84,090 + ECD_00075 0.38 -0.9
84,090 + ECD_00075 0.38 -0.4
84,091 - ECD_00075 0.38 +0.5
84,091 - ECD_00075 0.38 -0.3
84,091 - ECD_00075 0.38 -0.7
84,091 - ECD_00075 0.38 -1.0
84,091 - ECD_00075 0.38 +1.8
84,091 - ECD_00075 0.38 -1.4
84,091 - ECD_00075 0.38 -0.4
84,091 - ECD_00075 0.38 +0.9
84,094 + ECD_00075 0.39 -1.3
84,094 + ECD_00075 0.39 -0.3
84,095 - ECD_00075 0.39 +0.1
84,095 - ECD_00075 0.39 -0.4
84,095 - ECD_00075 0.39 +0.6
84,241 + ECD_00075 0.52 -0.7
84,264 + ECD_00075 0.54 +0.9
84,264 + ECD_00075 0.54 -2.8
84,265 - ECD_00075 0.54 +0.3
84,330 + ECD_00075 0.60 +0.8
84,330 + ECD_00075 0.60 -0.9
84,330 + ECD_00075 0.60 +0.3
84,513 - ECD_00075 0.77 -0.1
84,513 - ECD_00075 0.77 -0.9
84,629 + ECD_00075 0.88 -0.0
84,637 - ECD_00075 0.88 -1.1

Or see this region's nucleotide sequence