Strain Fitness in Escherichia coli BL21 around ECD_04255

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04254 and ECD_04255 are separated by 419 nucleotidesECD_04255 and ECD_04256 overlap by 29 nucleotides ECD_04254: ECD_04254 - putative DNase, at 4,531,856 to 4,532,635 _04254 ECD_04255: ECD_04255 - putative pyruvate formate lyase activating enzyme, at 4,533,055 to 4,533,918 _04255 ECD_04256: ECD_04256 - DUF3029 family protein, putative glycine radical enzyme, at 4,533,890 to 4,535,440 _04256 Position (kb) 4533 4534Strain fitness (log2 ratio) -2 -1 0 1 2at 4532.060 kb on - strand, within ECD_04254at 4532.060 kb on - strand, within ECD_04254at 4532.074 kb on + strand, within ECD_04254at 4532.097 kb on + strand, within ECD_04254at 4532.098 kb on - strand, within ECD_04254at 4532.098 kb on - strand, within ECD_04254at 4532.290 kb on + strand, within ECD_04254at 4532.290 kb on + strand, within ECD_04254at 4532.291 kb on - strand, within ECD_04254at 4532.305 kb on - strand, within ECD_04254at 4532.364 kb on + strand, within ECD_04254at 4532.364 kb on + strand, within ECD_04254at 4532.365 kb on - strand, within ECD_04254at 4532.365 kb on - strand, within ECD_04254at 4532.398 kb on + strand, within ECD_04254at 4532.398 kb on + strand, within ECD_04254at 4532.399 kb on - strand, within ECD_04254at 4532.399 kb on - strand, within ECD_04254at 4532.399 kb on - strand, within ECD_04254at 4532.419 kb on + strand, within ECD_04254at 4532.603 kb on - strandat 4532.606 kb on - strandat 4532.612 kb on + strandat 4532.612 kb on + strandat 4532.612 kb on + strandat 4532.612 kb on + strandat 4532.612 kb on + strandat 4532.613 kb on - strandat 4532.613 kb on - strandat 4532.614 kb on + strandat 4532.614 kb on + strandat 4532.614 kb on + strandat 4532.614 kb on + strandat 4532.614 kb on + strandat 4532.614 kb on + strandat 4532.614 kb on + strandat 4532.615 kb on - strandat 4532.615 kb on - strandat 4532.706 kb on - strandat 4532.735 kb on - strandat 4532.807 kb on - strandat 4532.879 kb on - strandat 4533.017 kb on + strandat 4533.038 kb on - strandat 4533.062 kb on + strandat 4533.076 kb on + strandat 4533.167 kb on + strand, within ECD_04255at 4533.168 kb on - strand, within ECD_04255at 4533.323 kb on + strand, within ECD_04255at 4533.324 kb on - strand, within ECD_04255at 4533.517 kb on - strand, within ECD_04255at 4533.517 kb on - strand, within ECD_04255at 4533.891 kb on + strandat 4533.923 kb on + strandat 4533.950 kb on - strandat 4534.042 kb on + strandat 4534.043 kb on - strandat 4534.043 kb on - strandat 4534.045 kb on - strand, within ECD_04256at 4534.131 kb on - strand, within ECD_04256at 4534.197 kb on + strand, within ECD_04256at 4534.198 kb on - strand, within ECD_04256at 4534.200 kb on + strand, within ECD_04256at 4534.200 kb on + strand, within ECD_04256at 4534.201 kb on - strand, within ECD_04256at 4534.341 kb on + strand, within ECD_04256at 4534.398 kb on - strand, within ECD_04256at 4534.425 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.482 kb on + strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.483 kb on - strand, within ECD_04256at 4534.543 kb on + strand, within ECD_04256at 4534.544 kb on - strand, within ECD_04256at 4534.625 kb on + strand, within ECD_04256at 4534.731 kb on + strand, within ECD_04256

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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4,532,060 - ECD_04254 0.26 +0.7
4,532,060 - ECD_04254 0.26 -0.6
4,532,074 + ECD_04254 0.28 -0.5
4,532,097 + ECD_04254 0.31 +0.4
4,532,098 - ECD_04254 0.31 -0.7
4,532,098 - ECD_04254 0.31 -0.4
4,532,290 + ECD_04254 0.56 +0.2
4,532,290 + ECD_04254 0.56 -0.9
4,532,291 - ECD_04254 0.56 -1.4
4,532,305 - ECD_04254 0.58 -0.2
4,532,364 + ECD_04254 0.65 +0.1
4,532,364 + ECD_04254 0.65 +0.0
4,532,365 - ECD_04254 0.65 +0.9
4,532,365 - ECD_04254 0.65 +0.1
4,532,398 + ECD_04254 0.69 -0.3
4,532,398 + ECD_04254 0.69 +1.3
4,532,399 - ECD_04254 0.70 -1.1
4,532,399 - ECD_04254 0.70 +1.5
4,532,399 - ECD_04254 0.70 -1.4
4,532,419 + ECD_04254 0.72 -0.6
4,532,603 - +2.1
4,532,606 - -2.5
4,532,612 + +0.4
4,532,612 + -0.1
4,532,612 + +0.3
4,532,612 + -0.2
4,532,612 + -0.3
4,532,613 - -0.6
4,532,613 - -0.0
4,532,614 + -0.7
4,532,614 + -1.4
4,532,614 + -0.2
4,532,614 + -1.5
4,532,614 + -0.9
4,532,614 + -0.3
4,532,614 + -0.3
4,532,615 - -0.4
4,532,615 - +0.3
4,532,706 - -1.4
4,532,735 - -0.8
4,532,807 - +1.1
4,532,879 - +0.2
4,533,017 + -0.1
4,533,038 - -0.6
4,533,062 + -0.3
4,533,076 + +0.6
4,533,167 + ECD_04255 0.13 +1.3
4,533,168 - ECD_04255 0.13 -0.1
4,533,323 + ECD_04255 0.31 +0.1
4,533,324 - ECD_04255 0.31 +0.8
4,533,517 - ECD_04255 0.53 +0.4
4,533,517 - ECD_04255 0.53 -1.4
4,533,891 + -0.3
4,533,923 + +0.2
4,533,950 - +2.0
4,534,042 + +0.3
4,534,043 - +0.4
4,534,043 - +1.8
4,534,045 - ECD_04256 0.10 -1.3
4,534,131 - ECD_04256 0.16 -0.3
4,534,197 + ECD_04256 0.20 -0.7
4,534,198 - ECD_04256 0.20 -1.5
4,534,200 + ECD_04256 0.20 -1.2
4,534,200 + ECD_04256 0.20 -0.2
4,534,201 - ECD_04256 0.20 -0.9
4,534,341 + ECD_04256 0.29 +0.6
4,534,398 - ECD_04256 0.33 +0.7
4,534,425 + ECD_04256 0.34 +0.4
4,534,482 + ECD_04256 0.38 -0.2
4,534,482 + ECD_04256 0.38 +1.6
4,534,482 + ECD_04256 0.38 -0.3
4,534,482 + ECD_04256 0.38 +0.6
4,534,483 - ECD_04256 0.38 -0.1
4,534,483 - ECD_04256 0.38 -1.1
4,534,483 - ECD_04256 0.38 +1.2
4,534,483 - ECD_04256 0.38 -0.2
4,534,543 + ECD_04256 0.42 -1.0
4,534,544 - ECD_04256 0.42 -1.1
4,534,625 + ECD_04256 0.47 +0.1
4,534,731 + ECD_04256 0.54 -0.4

Or see this region's nucleotide sequence