Strain Fitness in Escherichia coli BL21 around ECD_03810

Experiment: EV116

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03808 and ECD_03809 are separated by 4 nucleotidesECD_03809 and ECD_03810 are separated by 96 nucleotidesECD_03810 and ECD_03811 are separated by 134 nucleotides ECD_03808: ECD_03808 - stress-induced protein, at 4,021,215 to 4,021,643 _03808 ECD_03809: ECD_03809 - ferredoxin-NADP reductase; flavodoxin reductase, at 4,021,648 to 4,022,394 _03809 ECD_03810: ECD_03810 - fructose 1,6-bisphosphatase II, at 4,022,491 to 4,023,501 _03810 ECD_03811: ECD_03811 - glycerol kinase, at 4,023,636 to 4,025,144 _03811 Position (kb) 4022 4023 4024Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4021.560 kb on - strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.598 kb on + strand, within ECD_03808at 4021.637 kb on + strandat 4021.642 kb on - strandat 4021.656 kb on - strandat 4021.691 kb on - strandat 4021.734 kb on + strand, within ECD_03809at 4021.734 kb on + strand, within ECD_03809at 4021.785 kb on + strand, within ECD_03809at 4021.943 kb on + strand, within ECD_03809at 4021.948 kb on + strand, within ECD_03809at 4021.948 kb on + strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.949 kb on - strand, within ECD_03809at 4021.962 kb on - strand, within ECD_03809at 4022.002 kb on + strand, within ECD_03809at 4022.014 kb on + strand, within ECD_03809at 4022.015 kb on - strand, within ECD_03809at 4022.033 kb on + strand, within ECD_03809at 4022.034 kb on - strand, within ECD_03809at 4022.034 kb on - strand, within ECD_03809at 4022.050 kb on - strand, within ECD_03809at 4022.069 kb on - strand, within ECD_03809at 4022.069 kb on - strand, within ECD_03809at 4022.087 kb on - strand, within ECD_03809at 4022.122 kb on - strand, within ECD_03809at 4022.171 kb on - strand, within ECD_03809at 4022.171 kb on - strand, within ECD_03809at 4022.230 kb on - strand, within ECD_03809at 4022.230 kb on - strand, within ECD_03809at 4022.230 kb on - strand, within ECD_03809at 4022.234 kb on + strand, within ECD_03809at 4022.234 kb on + strand, within ECD_03809at 4022.235 kb on - strand, within ECD_03809at 4022.235 kb on - strand, within ECD_03809at 4022.235 kb on - strand, within ECD_03809at 4022.240 kb on + strand, within ECD_03809at 4022.240 kb on + strand, within ECD_03809at 4022.335 kb on - strandat 4022.364 kb on + strandat 4022.424 kb on + strandat 4022.425 kb on - strandat 4022.534 kb on + strandat 4022.534 kb on + strandat 4022.534 kb on + strandat 4022.534 kb on + strandat 4022.646 kb on + strand, within ECD_03810at 4022.704 kb on + strand, within ECD_03810at 4022.705 kb on - strand, within ECD_03810at 4022.705 kb on - strand, within ECD_03810at 4022.705 kb on - strand, within ECD_03810at 4022.770 kb on - strand, within ECD_03810at 4022.830 kb on + strand, within ECD_03810at 4022.830 kb on + strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.831 kb on - strand, within ECD_03810at 4022.886 kb on - strand, within ECD_03810at 4022.913 kb on + strand, within ECD_03810at 4022.953 kb on - strand, within ECD_03810at 4022.959 kb on + strand, within ECD_03810at 4022.960 kb on - strand, within ECD_03810at 4022.965 kb on + strand, within ECD_03810at 4023.012 kb on + strand, within ECD_03810at 4023.144 kb on + strand, within ECD_03810at 4023.145 kb on - strand, within ECD_03810at 4023.145 kb on - strand, within ECD_03810at 4023.145 kb on - strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.146 kb on + strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.147 kb on - strand, within ECD_03810at 4023.150 kb on + strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.151 kb on - strand, within ECD_03810at 4023.258 kb on + strand, within ECD_03810at 4023.258 kb on + strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.259 kb on - strand, within ECD_03810at 4023.263 kb on - strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.302 kb on + strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.303 kb on - strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.378 kb on + strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.379 kb on - strand, within ECD_03810at 4023.502 kb on - strandat 4023.511 kb on + strandat 4023.537 kb on + strandat 4023.538 kb on - strandat 4023.538 kb on - strandat 4023.612 kb on + strandat 4023.632 kb on + strandat 4023.632 kb on + strandat 4023.633 kb on - strandat 4023.700 kb on + strandat 4023.704 kb on + strandat 4023.704 kb on + strandat 4023.704 kb on + strandat 4023.903 kb on + strand, within ECD_03811at 4023.904 kb on - strand, within ECD_03811at 4023.904 kb on - strand, within ECD_03811at 4023.904 kb on - strand, within ECD_03811at 4023.986 kb on - strand, within ECD_03811at 4023.986 kb on - strand, within ECD_03811at 4024.011 kb on + strand, within ECD_03811at 4024.012 kb on - strand, within ECD_03811at 4024.013 kb on + strand, within ECD_03811at 4024.014 kb on - strand, within ECD_03811at 4024.097 kb on + strand, within ECD_03811at 4024.097 kb on + strand, within ECD_03811at 4024.098 kb on - strand, within ECD_03811at 4024.114 kb on + strand, within ECD_03811at 4024.114 kb on + strand, within ECD_03811at 4024.114 kb on + strand, within ECD_03811at 4024.115 kb on - strand, within ECD_03811at 4024.115 kb on - strand, within ECD_03811at 4024.115 kb on - strand, within ECD_03811at 4024.115 kb on - strand, within ECD_03811at 4024.243 kb on + strand, within ECD_03811at 4024.243 kb on + strand, within ECD_03811at 4024.244 kb on - strand, within ECD_03811at 4024.348 kb on + strand, within ECD_03811at 4024.349 kb on - strand, within ECD_03811at 4024.349 kb on - strand, within ECD_03811at 4024.460 kb on + strand, within ECD_03811at 4024.461 kb on - strand, within ECD_03811at 4024.471 kb on + strand, within ECD_03811at 4024.471 kb on + strand, within ECD_03811at 4024.472 kb on - strand, within ECD_03811at 4024.472 kb on - strand, within ECD_03811at 4024.473 kb on + strand, within ECD_03811at 4024.474 kb on - strand, within ECD_03811at 4024.474 kb on - strand, within ECD_03811

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EV116
remove
4,021,560 - ECD_03808 0.80 +0.8
4,021,598 + ECD_03808 0.89 -0.7
4,021,598 + ECD_03808 0.89 +0.0
4,021,598 + ECD_03808 0.89 +0.7
4,021,637 + -0.0
4,021,642 - +0.4
4,021,656 - -0.4
4,021,691 - -1.4
4,021,734 + ECD_03809 0.12 +0.0
4,021,734 + ECD_03809 0.12 +0.2
4,021,785 + ECD_03809 0.18 -1.0
4,021,943 + ECD_03809 0.39 +0.7
4,021,948 + ECD_03809 0.40 +0.4
4,021,948 + ECD_03809 0.40 -0.5
4,021,949 - ECD_03809 0.40 -0.7
4,021,949 - ECD_03809 0.40 +0.3
4,021,949 - ECD_03809 0.40 +0.7
4,021,962 - ECD_03809 0.42 -1.3
4,022,002 + ECD_03809 0.47 +0.0
4,022,014 + ECD_03809 0.49 +1.4
4,022,015 - ECD_03809 0.49 +1.1
4,022,033 + ECD_03809 0.52 -0.1
4,022,034 - ECD_03809 0.52 -0.2
4,022,034 - ECD_03809 0.52 +0.0
4,022,050 - ECD_03809 0.54 +0.4
4,022,069 - ECD_03809 0.56 -0.1
4,022,069 - ECD_03809 0.56 -0.8
4,022,087 - ECD_03809 0.59 -1.6
4,022,122 - ECD_03809 0.63 -1.1
4,022,171 - ECD_03809 0.70 +0.2
4,022,171 - ECD_03809 0.70 +1.4
4,022,230 - ECD_03809 0.78 +0.8
4,022,230 - ECD_03809 0.78 -2.2
4,022,230 - ECD_03809 0.78 -0.5
4,022,234 + ECD_03809 0.78 -0.1
4,022,234 + ECD_03809 0.78 +0.9
4,022,235 - ECD_03809 0.79 +0.9
4,022,235 - ECD_03809 0.79 +1.0
4,022,235 - ECD_03809 0.79 -2.4
4,022,240 + ECD_03809 0.79 -0.6
4,022,240 + ECD_03809 0.79 +2.4
4,022,335 - -0.2
4,022,364 + -0.3
4,022,424 + +0.9
4,022,425 - +0.1
4,022,534 + +0.8
4,022,534 + -1.2
4,022,534 + -0.4
4,022,534 + +0.2
4,022,646 + ECD_03810 0.15 +0.7
4,022,704 + ECD_03810 0.21 -0.3
4,022,705 - ECD_03810 0.21 +0.6
4,022,705 - ECD_03810 0.21 -1.5
4,022,705 - ECD_03810 0.21 +0.7
4,022,770 - ECD_03810 0.28 -0.2
4,022,830 + ECD_03810 0.34 +0.8
4,022,830 + ECD_03810 0.34 +0.8
4,022,831 - ECD_03810 0.34 +0.8
4,022,831 - ECD_03810 0.34 +0.6
4,022,831 - ECD_03810 0.34 +0.9
4,022,831 - ECD_03810 0.34 -0.4
4,022,831 - ECD_03810 0.34 +0.1
4,022,886 - ECD_03810 0.39 +0.5
4,022,913 + ECD_03810 0.42 +0.1
4,022,953 - ECD_03810 0.46 -0.9
4,022,959 + ECD_03810 0.46 +0.5
4,022,960 - ECD_03810 0.46 -0.1
4,022,965 + ECD_03810 0.47 -1.4
4,023,012 + ECD_03810 0.52 +1.2
4,023,144 + ECD_03810 0.65 +0.1
4,023,145 - ECD_03810 0.65 -0.1
4,023,145 - ECD_03810 0.65 +0.8
4,023,145 - ECD_03810 0.65 +0.6
4,023,146 + ECD_03810 0.65 -0.2
4,023,146 + ECD_03810 0.65 -0.0
4,023,146 + ECD_03810 0.65 -1.1
4,023,146 + ECD_03810 0.65 -1.5
4,023,146 + ECD_03810 0.65 -1.1
4,023,146 + ECD_03810 0.65 +0.7
4,023,146 + ECD_03810 0.65 +0.1
4,023,146 + ECD_03810 0.65 +0.6
4,023,146 + ECD_03810 0.65 +0.2
4,023,146 + ECD_03810 0.65 -2.3
4,023,146 + ECD_03810 0.65 +0.2
4,023,146 + ECD_03810 0.65 +0.8
4,023,146 + ECD_03810 0.65 +0.1
4,023,146 + ECD_03810 0.65 +1.4
4,023,146 + ECD_03810 0.65 +0.5
4,023,146 + ECD_03810 0.65 +1.3
4,023,146 + ECD_03810 0.65 -1.2
4,023,146 + ECD_03810 0.65 -0.9
4,023,147 - ECD_03810 0.65 +0.7
4,023,147 - ECD_03810 0.65 +0.2
4,023,147 - ECD_03810 0.65 +1.4
4,023,147 - ECD_03810 0.65 +0.4
4,023,147 - ECD_03810 0.65 +0.8
4,023,147 - ECD_03810 0.65 +1.0
4,023,147 - ECD_03810 0.65 -0.1
4,023,147 - ECD_03810 0.65 +0.7
4,023,147 - ECD_03810 0.65 -0.7
4,023,147 - ECD_03810 0.65 -0.2
4,023,147 - ECD_03810 0.65 +0.9
4,023,147 - ECD_03810 0.65 +0.3
4,023,147 - ECD_03810 0.65 +0.2
4,023,147 - ECD_03810 0.65 -0.7
4,023,147 - ECD_03810 0.65 -0.3
4,023,147 - ECD_03810 0.65 +1.5
4,023,147 - ECD_03810 0.65 +0.1
4,023,147 - ECD_03810 0.65 -0.1
4,023,147 - ECD_03810 0.65 +0.7
4,023,147 - ECD_03810 0.65 +0.1
4,023,147 - ECD_03810 0.65 +0.3
4,023,150 + ECD_03810 0.65 -0.1
4,023,151 - ECD_03810 0.65 +0.1
4,023,151 - ECD_03810 0.65 +0.7
4,023,151 - ECD_03810 0.65 -0.3
4,023,151 - ECD_03810 0.65 -0.3
4,023,258 + ECD_03810 0.76 -1.4
4,023,258 + ECD_03810 0.76 -0.2
4,023,259 - ECD_03810 0.76 -0.6
4,023,259 - ECD_03810 0.76 +1.7
4,023,259 - ECD_03810 0.76 -0.4
4,023,259 - ECD_03810 0.76 -0.6
4,023,263 - ECD_03810 0.76 +0.6
4,023,302 + ECD_03810 0.80 +0.8
4,023,302 + ECD_03810 0.80 +0.7
4,023,302 + ECD_03810 0.80 +0.5
4,023,302 + ECD_03810 0.80 +1.9
4,023,302 + ECD_03810 0.80 -0.2
4,023,303 - ECD_03810 0.80 +0.5
4,023,303 - ECD_03810 0.80 +0.6
4,023,303 - ECD_03810 0.80 +0.0
4,023,303 - ECD_03810 0.80 +0.3
4,023,303 - ECD_03810 0.80 +0.1
4,023,378 + ECD_03810 0.88 +0.4
4,023,378 + ECD_03810 0.88 -1.5
4,023,378 + ECD_03810 0.88 -0.2
4,023,378 + ECD_03810 0.88 +0.0
4,023,378 + ECD_03810 0.88 +0.1
4,023,378 + ECD_03810 0.88 +1.0
4,023,378 + ECD_03810 0.88 +2.0
4,023,379 - ECD_03810 0.88 -0.2
4,023,379 - ECD_03810 0.88 +0.4
4,023,379 - ECD_03810 0.88 +0.1
4,023,379 - ECD_03810 0.88 +0.0
4,023,502 - -0.2
4,023,511 + -0.6
4,023,537 + -0.2
4,023,538 - +0.6
4,023,538 - +1.0
4,023,612 + +1.6
4,023,632 + +0.2
4,023,632 + +3.2
4,023,633 - +0.7
4,023,700 + -1.8
4,023,704 + -0.3
4,023,704 + +1.6
4,023,704 + +1.2
4,023,903 + ECD_03811 0.18 +1.5
4,023,904 - ECD_03811 0.18 +0.7
4,023,904 - ECD_03811 0.18 +0.7
4,023,904 - ECD_03811 0.18 +1.9
4,023,986 - ECD_03811 0.23 +1.2
4,023,986 - ECD_03811 0.23 +0.0
4,024,011 + ECD_03811 0.25 +1.9
4,024,012 - ECD_03811 0.25 -0.9
4,024,013 + ECD_03811 0.25 +0.4
4,024,014 - ECD_03811 0.25 -0.5
4,024,097 + ECD_03811 0.31 -0.9
4,024,097 + ECD_03811 0.31 +0.2
4,024,098 - ECD_03811 0.31 +0.9
4,024,114 + ECD_03811 0.32 +0.9
4,024,114 + ECD_03811 0.32 +0.8
4,024,114 + ECD_03811 0.32 +0.9
4,024,115 - ECD_03811 0.32 +1.6
4,024,115 - ECD_03811 0.32 +1.4
4,024,115 - ECD_03811 0.32 +0.9
4,024,115 - ECD_03811 0.32 +2.0
4,024,243 + ECD_03811 0.40 +2.5
4,024,243 + ECD_03811 0.40 +0.7
4,024,244 - ECD_03811 0.40 +1.2
4,024,348 + ECD_03811 0.47 +1.1
4,024,349 - ECD_03811 0.47 -1.9
4,024,349 - ECD_03811 0.47 +1.4
4,024,460 + ECD_03811 0.55 +1.7
4,024,461 - ECD_03811 0.55 +2.1
4,024,471 + ECD_03811 0.55 +1.3
4,024,471 + ECD_03811 0.55 -0.3
4,024,472 - ECD_03811 0.55 +1.2
4,024,472 - ECD_03811 0.55 +1.6
4,024,473 + ECD_03811 0.55 +1.8
4,024,474 - ECD_03811 0.56 +1.3
4,024,474 - ECD_03811 0.56 -0.3

Or see this region's nucleotide sequence