Strain Fitness in Escherichia coli BL21 around ECD_03711

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03710 and ECD_03711 are separated by 25 nucleotidesECD_03711 and ECD_03712 are separated by 52 nucleotides ECD_03710: ECD_03710 - putative permease, at 3,909,249 to 3,910,472 _03710 ECD_03711: ECD_03711 - hypothetical protein, at 3,910,498 to 3,910,851 _03711 ECD_03712: ECD_03712 - Carbamate kinase-like protein yahI, at 3,910,904 to 3,911,944 _03712 Position (kb) 3910 3911Strain fitness (log2 ratio) -2 -1 0 1 2at 3909.528 kb on - strand, within ECD_03710at 3909.539 kb on + strand, within ECD_03710at 3909.539 kb on + strand, within ECD_03710at 3909.539 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.647 kb on + strand, within ECD_03710at 3909.648 kb on - strand, within ECD_03710at 3909.790 kb on + strand, within ECD_03710at 3909.851 kb on + strand, within ECD_03710at 3909.884 kb on + strand, within ECD_03710at 3909.885 kb on - strand, within ECD_03710at 3909.974 kb on - strand, within ECD_03710at 3909.974 kb on - strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.982 kb on + strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3909.983 kb on - strand, within ECD_03710at 3910.089 kb on + strand, within ECD_03710at 3910.129 kb on - strand, within ECD_03710at 3910.137 kb on + strand, within ECD_03710at 3910.138 kb on - strand, within ECD_03710at 3910.138 kb on - strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.154 kb on + strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.155 kb on - strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.252 kb on + strand, within ECD_03710at 3910.253 kb on - strand, within ECD_03710at 3910.253 kb on - strand, within ECD_03710at 3910.302 kb on + strand, within ECD_03710at 3910.302 kb on + strand, within ECD_03710at 3910.303 kb on - strand, within ECD_03710at 3910.303 kb on - strand, within ECD_03710at 3910.337 kb on + strand, within ECD_03710at 3910.466 kb on + strandat 3910.472 kb on + strandat 3910.472 kb on + strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.473 kb on - strandat 3910.475 kb on + strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.476 kb on - strandat 3910.489 kb on - strandat 3910.507 kb on - strandat 3910.523 kb on + strandat 3910.549 kb on - strand, within ECD_03711at 3910.589 kb on - strand, within ECD_03711at 3910.758 kb on + strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.759 kb on - strand, within ECD_03711at 3910.824 kb on + strandat 3910.825 kb on - strandat 3910.870 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.881 kb on + strandat 3910.882 kb on - strandat 3910.949 kb on + strandat 3911.137 kb on + strand, within ECD_03712at 3911.137 kb on + strand, within ECD_03712at 3911.592 kb on + strand, within ECD_03712at 3911.593 kb on - strand, within ECD_03712at 3911.611 kb on + strand, within ECD_03712at 3911.611 kb on + strand, within ECD_03712at 3911.612 kb on - strand, within ECD_03712at 3911.711 kb on + strand, within ECD_03712at 3911.712 kb on - strand, within ECD_03712at 3911.714 kb on + strand, within ECD_03712at 3911.740 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.749 kb on + strand, within ECD_03712at 3911.750 kb on - strand, within ECD_03712at 3911.750 kb on - strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.778 kb on + strand, within ECD_03712at 3911.792 kb on - strand, within ECD_03712at 3911.792 kb on - strand, within ECD_03712at 3911.795 kb on - strand, within ECD_03712

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,909,528 - ECD_03710 0.23 -0.7
3,909,539 + ECD_03710 0.24 +0.0
3,909,539 + ECD_03710 0.24 +0.2
3,909,539 + ECD_03710 0.24 +0.5
3,909,647 + ECD_03710 0.33 -0.0
3,909,647 + ECD_03710 0.33 -1.1
3,909,647 + ECD_03710 0.33 -1.0
3,909,647 + ECD_03710 0.33 +0.2
3,909,648 - ECD_03710 0.33 +0.1
3,909,790 + ECD_03710 0.44 +2.3
3,909,851 + ECD_03710 0.49 +1.6
3,909,884 + ECD_03710 0.52 -0.1
3,909,885 - ECD_03710 0.52 -0.1
3,909,974 - ECD_03710 0.59 -1.2
3,909,974 - ECD_03710 0.59 -0.3
3,909,982 + ECD_03710 0.60 -0.5
3,909,982 + ECD_03710 0.60 -0.8
3,909,982 + ECD_03710 0.60 +0.1
3,909,982 + ECD_03710 0.60 +2.1
3,909,982 + ECD_03710 0.60 +0.8
3,909,983 - ECD_03710 0.60 -1.5
3,909,983 - ECD_03710 0.60 -0.0
3,909,983 - ECD_03710 0.60 -0.7
3,909,983 - ECD_03710 0.60 -0.4
3,910,089 + ECD_03710 0.69 +0.4
3,910,129 - ECD_03710 0.72 +0.5
3,910,137 + ECD_03710 0.73 -0.3
3,910,138 - ECD_03710 0.73 -1.0
3,910,138 - ECD_03710 0.73 -0.8
3,910,154 + ECD_03710 0.74 +0.2
3,910,154 + ECD_03710 0.74 +0.7
3,910,154 + ECD_03710 0.74 -0.0
3,910,155 - ECD_03710 0.74 -0.6
3,910,155 - ECD_03710 0.74 -0.2
3,910,155 - ECD_03710 0.74 -0.5
3,910,252 + ECD_03710 0.82 -0.7
3,910,252 + ECD_03710 0.82 -0.2
3,910,252 + ECD_03710 0.82 -0.7
3,910,252 + ECD_03710 0.82 -2.2
3,910,253 - ECD_03710 0.82 +0.4
3,910,253 - ECD_03710 0.82 -0.5
3,910,302 + ECD_03710 0.86 +1.0
3,910,302 + ECD_03710 0.86 -0.4
3,910,303 - ECD_03710 0.86 -0.3
3,910,303 - ECD_03710 0.86 -0.3
3,910,337 + ECD_03710 0.89 -1.5
3,910,466 + -0.4
3,910,472 + +0.9
3,910,472 + +1.2
3,910,473 - -0.0
3,910,473 - +0.6
3,910,473 - -1.0
3,910,473 - -1.1
3,910,473 - +1.1
3,910,475 + -0.7
3,910,476 - +0.1
3,910,476 - +0.4
3,910,476 - -0.5
3,910,476 - -0.6
3,910,476 - -1.4
3,910,476 - -1.0
3,910,476 - +0.2
3,910,489 - -0.2
3,910,507 - -0.3
3,910,523 + -2.4
3,910,549 - ECD_03711 0.14 +0.1
3,910,589 - ECD_03711 0.26 +0.8
3,910,758 + ECD_03711 0.73 -0.7
3,910,759 - ECD_03711 0.74 -0.6
3,910,759 - ECD_03711 0.74 -0.5
3,910,759 - ECD_03711 0.74 +0.1
3,910,824 + -0.6
3,910,825 - -0.1
3,910,870 + -0.2
3,910,881 + -0.7
3,910,881 + -0.9
3,910,881 + -0.3
3,910,882 - +0.6
3,910,949 + -0.2
3,911,137 + ECD_03712 0.22 -0.3
3,911,137 + ECD_03712 0.22 -0.1
3,911,592 + ECD_03712 0.66 -0.8
3,911,593 - ECD_03712 0.66 +0.1
3,911,611 + ECD_03712 0.68 -1.4
3,911,611 + ECD_03712 0.68 +0.2
3,911,612 - ECD_03712 0.68 +0.7
3,911,711 + ECD_03712 0.78 -1.3
3,911,712 - ECD_03712 0.78 +1.9
3,911,714 + ECD_03712 0.78 +0.1
3,911,740 + ECD_03712 0.80 +1.7
3,911,749 + ECD_03712 0.81 -0.6
3,911,749 + ECD_03712 0.81 +0.9
3,911,749 + ECD_03712 0.81 +1.1
3,911,749 + ECD_03712 0.81 -1.2
3,911,750 - ECD_03712 0.81 +1.1
3,911,750 - ECD_03712 0.81 +0.0
3,911,778 + ECD_03712 0.84 -0.4
3,911,778 + ECD_03712 0.84 -0.6
3,911,778 + ECD_03712 0.84 -0.9
3,911,792 - ECD_03712 0.85 +0.3
3,911,792 - ECD_03712 0.85 -0.0
3,911,795 - ECD_03712 0.86 +1.0

Or see this region's nucleotide sequence