Strain Fitness in Escherichia coli BL21 around ECD_03117

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03116 and ECD_03117 are separated by 11 nucleotidesECD_03117 and ECD_03118 are separated by 328 nucleotides ECD_03116: ECD_03116 - pantothenate:sodium symporter, at 3,268,763 to 3,270,214 _03116 ECD_03117: ECD_03117 - methyltransferase for 50S ribosomal subunit protein L11, at 3,270,226 to 3,271,107 _03117 ECD_03118: ECD_03118 - tRNA-dihydrouridine synthase B, at 3,271,436 to 3,272,401 _03118 Position (kb) 3270 3271 3272Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3269.274 kb on + strand, within ECD_03116at 3269.274 kb on + strand, within ECD_03116at 3269.276 kb on + strand, within ECD_03116at 3269.276 kb on + strand, within ECD_03116at 3269.276 kb on + strand, within ECD_03116at 3269.276 kb on + strand, within ECD_03116at 3269.276 kb on + strand, within ECD_03116at 3269.276 kb on + strand, within ECD_03116at 3269.278 kb on + strand, within ECD_03116at 3269.278 kb on + strand, within ECD_03116at 3269.363 kb on - strand, within ECD_03116at 3269.371 kb on - strand, within ECD_03116at 3269.373 kb on + strand, within ECD_03116at 3269.373 kb on + strand, within ECD_03116at 3269.374 kb on - strand, within ECD_03116at 3269.403 kb on + strand, within ECD_03116at 3269.458 kb on + strand, within ECD_03116at 3269.459 kb on - strand, within ECD_03116at 3269.476 kb on + strand, within ECD_03116at 3269.477 kb on - strand, within ECD_03116at 3269.549 kb on + strand, within ECD_03116at 3269.549 kb on + strand, within ECD_03116at 3269.641 kb on - strand, within ECD_03116at 3269.771 kb on - strand, within ECD_03116at 3269.881 kb on + strand, within ECD_03116at 3269.881 kb on + strand, within ECD_03116at 3269.881 kb on + strand, within ECD_03116at 3269.882 kb on - strand, within ECD_03116at 3269.882 kb on - strand, within ECD_03116at 3269.886 kb on + strand, within ECD_03116at 3269.886 kb on + strand, within ECD_03116at 3269.887 kb on - strand, within ECD_03116at 3270.009 kb on - strand, within ECD_03116at 3270.040 kb on - strand, within ECD_03116at 3270.069 kb on - strandat 3270.075 kb on + strandat 3270.115 kb on + strandat 3270.133 kb on - strandat 3270.133 kb on - strandat 3270.133 kb on - strandat 3270.172 kb on + strandat 3270.202 kb on + strandat 3270.208 kb on + strandat 3270.212 kb on + strandat 3270.495 kb on - strand, within ECD_03117at 3270.617 kb on + strand, within ECD_03117at 3270.618 kb on - strand, within ECD_03117at 3270.789 kb on + strand, within ECD_03117at 3270.823 kb on - strand, within ECD_03117at 3270.862 kb on + strand, within ECD_03117at 3270.862 kb on + strand, within ECD_03117at 3270.863 kb on - strand, within ECD_03117at 3270.863 kb on - strand, within ECD_03117at 3270.932 kb on + strand, within ECD_03117at 3270.933 kb on - strand, within ECD_03117at 3271.033 kb on + strandat 3271.099 kb on - strandat 3271.105 kb on + strandat 3271.105 kb on + strandat 3271.279 kb on + strandat 3271.301 kb on + strandat 3271.320 kb on + strandat 3271.392 kb on - strandat 3271.394 kb on + strandat 3271.396 kb on + strandat 3271.396 kb on + strandat 3271.417 kb on + strandat 3271.417 kb on + strandat 3271.417 kb on + strandat 3271.417 kb on + strandat 3271.418 kb on - strandat 3271.418 kb on - strandat 3271.430 kb on + strandat 3271.430 kb on + strandat 3271.451 kb on + strandat 3271.451 kb on + strandat 3271.452 kb on - strandat 3271.567 kb on + strand, within ECD_03118at 3271.687 kb on + strand, within ECD_03118at 3271.688 kb on - strand, within ECD_03118at 3271.882 kb on + strand, within ECD_03118at 3271.982 kb on + strand, within ECD_03118at 3271.990 kb on + strand, within ECD_03118at 3271.990 kb on + strand, within ECD_03118at 3272.078 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.080 kb on + strand, within ECD_03118at 3272.103 kb on + strand, within ECD_03118

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,269,274 + ECD_03116 0.35 +0.3
3,269,274 + ECD_03116 0.35 +0.1
3,269,276 + ECD_03116 0.35 -0.6
3,269,276 + ECD_03116 0.35 +1.2
3,269,276 + ECD_03116 0.35 +0.1
3,269,276 + ECD_03116 0.35 +0.8
3,269,276 + ECD_03116 0.35 -0.6
3,269,276 + ECD_03116 0.35 -0.0
3,269,278 + ECD_03116 0.35 +0.6
3,269,278 + ECD_03116 0.35 +0.6
3,269,363 - ECD_03116 0.41 -1.1
3,269,371 - ECD_03116 0.42 +0.4
3,269,373 + ECD_03116 0.42 +2.9
3,269,373 + ECD_03116 0.42 +0.7
3,269,374 - ECD_03116 0.42 +1.0
3,269,403 + ECD_03116 0.44 -0.4
3,269,458 + ECD_03116 0.48 +2.0
3,269,459 - ECD_03116 0.48 +1.9
3,269,476 + ECD_03116 0.49 +0.4
3,269,477 - ECD_03116 0.49 -1.1
3,269,549 + ECD_03116 0.54 +0.8
3,269,549 + ECD_03116 0.54 -0.3
3,269,641 - ECD_03116 0.60 +1.1
3,269,771 - ECD_03116 0.69 +0.7
3,269,881 + ECD_03116 0.77 +0.1
3,269,881 + ECD_03116 0.77 -1.1
3,269,881 + ECD_03116 0.77 +0.1
3,269,882 - ECD_03116 0.77 +1.8
3,269,882 - ECD_03116 0.77 +1.6
3,269,886 + ECD_03116 0.77 -0.6
3,269,886 + ECD_03116 0.77 +0.8
3,269,887 - ECD_03116 0.77 +1.7
3,270,009 - ECD_03116 0.86 +1.9
3,270,040 - ECD_03116 0.88 +0.4
3,270,069 - +1.6
3,270,075 + +0.3
3,270,115 + +0.1
3,270,133 - -0.9
3,270,133 - -0.6
3,270,133 - +1.3
3,270,172 + -0.4
3,270,202 + -3.5
3,270,208 + -1.0
3,270,212 + +0.4
3,270,495 - ECD_03117 0.30 +1.9
3,270,617 + ECD_03117 0.44 -1.7
3,270,618 - ECD_03117 0.44 +1.1
3,270,789 + ECD_03117 0.64 +1.2
3,270,823 - ECD_03117 0.68 +1.4
3,270,862 + ECD_03117 0.72 +0.8
3,270,862 + ECD_03117 0.72 +0.6
3,270,863 - ECD_03117 0.72 +0.5
3,270,863 - ECD_03117 0.72 +2.1
3,270,932 + ECD_03117 0.80 +0.8
3,270,933 - ECD_03117 0.80 +2.3
3,271,033 + +1.4
3,271,099 - +0.9
3,271,105 + -0.4
3,271,105 + -0.0
3,271,279 + -2.4
3,271,301 + -1.9
3,271,320 + -2.6
3,271,392 - -1.9
3,271,394 + -4.1
3,271,396 + -4.1
3,271,396 + -2.0
3,271,417 + -3.8
3,271,417 + -3.1
3,271,417 + -3.2
3,271,417 + -1.6
3,271,418 - -0.9
3,271,418 - -1.5
3,271,430 + -3.1
3,271,430 + -2.4
3,271,451 + -1.2
3,271,451 + -1.2
3,271,452 - -2.0
3,271,567 + ECD_03118 0.14 -1.1
3,271,687 + ECD_03118 0.26 -1.2
3,271,688 - ECD_03118 0.26 -1.0
3,271,882 + ECD_03118 0.46 -2.4
3,271,982 + ECD_03118 0.57 -2.5
3,271,990 + ECD_03118 0.57 -2.2
3,271,990 + ECD_03118 0.57 -4.0
3,272,078 + ECD_03118 0.66 -3.2
3,272,080 + ECD_03118 0.67 -1.3
3,272,080 + ECD_03118 0.67 -1.6
3,272,080 + ECD_03118 0.67 -2.7
3,272,103 + ECD_03118 0.69 -2.2

Or see this region's nucleotide sequence