Strain Fitness in Escherichia coli BL21 around ECD_02897

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02895 and ECD_02896 are separated by 52 nucleotidesECD_02896 and ECD_02897 are separated by 151 nucleotidesECD_02897 and ECD_02898 overlap by 4 nucleotides ECD_02895: ECD_02895 - transcriptional repressor for mcbR biofilm gene, at 3,036,186 to 3,036,668 _02895 ECD_02896: ECD_02896 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein, at 3,036,721 to 3,037,113 _02896 ECD_02897: ECD_02897 - quorum sensing DNA-binding response regulator in two-component regulatory system with QseC, at 3,037,265 to 3,037,924 _02897 ECD_02898: ECD_02898 - quorum sensing sensory histidine kinase in two-component regulatory system with QseB, at 3,037,921 to 3,039,270 _02898 Position (kb) 3037 3038Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3036.324 kb on + strand, within ECD_02895at 3036.338 kb on + strand, within ECD_02895at 3036.449 kb on + strand, within ECD_02895at 3036.574 kb on + strand, within ECD_02895at 3036.574 kb on + strand, within ECD_02895at 3036.575 kb on - strand, within ECD_02895at 3036.621 kb on + strandat 3036.622 kb on - strandat 3036.622 kb on - strandat 3036.646 kb on - strandat 3036.687 kb on + strandat 3036.861 kb on + strand, within ECD_02896at 3036.862 kb on - strand, within ECD_02896at 3036.865 kb on - strand, within ECD_02896at 3036.887 kb on + strand, within ECD_02896at 3036.887 kb on + strand, within ECD_02896at 3036.887 kb on + strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.888 kb on - strand, within ECD_02896at 3036.967 kb on + strand, within ECD_02896at 3036.967 kb on + strand, within ECD_02896at 3036.968 kb on - strand, within ECD_02896at 3036.968 kb on - strand, within ECD_02896at 3037.085 kb on - strandat 3037.094 kb on - strandat 3037.117 kb on + strandat 3037.150 kb on + strandat 3037.151 kb on - strandat 3037.204 kb on + strandat 3037.204 kb on + strandat 3037.216 kb on + strandat 3037.241 kb on + strandat 3037.241 kb on + strandat 3037.242 kb on - strandat 3037.242 kb on - strandat 3037.281 kb on + strandat 3037.282 kb on - strandat 3037.325 kb on - strandat 3037.327 kb on + strandat 3037.328 kb on - strandat 3037.355 kb on - strand, within ECD_02897at 3037.355 kb on - strand, within ECD_02897at 3037.385 kb on + strand, within ECD_02897at 3037.397 kb on + strand, within ECD_02897at 3037.397 kb on + strand, within ECD_02897at 3037.419 kb on + strand, within ECD_02897at 3037.419 kb on + strand, within ECD_02897at 3037.420 kb on - strand, within ECD_02897at 3037.528 kb on - strand, within ECD_02897at 3037.556 kb on + strand, within ECD_02897at 3037.557 kb on - strand, within ECD_02897at 3037.581 kb on + strand, within ECD_02897at 3037.581 kb on + strand, within ECD_02897at 3037.681 kb on + strand, within ECD_02897at 3037.682 kb on - strand, within ECD_02897at 3037.708 kb on - strand, within ECD_02897at 3037.800 kb on - strand, within ECD_02897at 3037.801 kb on + strand, within ECD_02897at 3037.802 kb on - strand, within ECD_02897at 3037.802 kb on - strand, within ECD_02897at 3037.825 kb on + strand, within ECD_02897at 3037.826 kb on - strand, within ECD_02897at 3037.885 kb on + strandat 3037.898 kb on - strandat 3037.898 kb on - strandat 3037.912 kb on - strandat 3037.912 kb on - strandat 3037.941 kb on + strandat 3037.974 kb on - strandat 3038.084 kb on + strand, within ECD_02898at 3038.088 kb on + strand, within ECD_02898at 3038.241 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.250 kb on + strand, within ECD_02898at 3038.251 kb on - strand, within ECD_02898at 3038.251 kb on - strand, within ECD_02898at 3038.254 kb on + strand, within ECD_02898at 3038.254 kb on + strand, within ECD_02898at 3038.371 kb on + strand, within ECD_02898at 3038.371 kb on + strand, within ECD_02898at 3038.444 kb on + strand, within ECD_02898at 3038.459 kb on + strand, within ECD_02898at 3038.459 kb on + strand, within ECD_02898at 3038.462 kb on + strand, within ECD_02898at 3038.507 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.511 kb on + strand, within ECD_02898at 3038.512 kb on - strand, within ECD_02898at 3038.641 kb on - strand, within ECD_02898at 3038.756 kb on + strand, within ECD_02898at 3038.756 kb on + strand, within ECD_02898at 3038.756 kb on + strand, within ECD_02898at 3038.889 kb on + strand, within ECD_02898at 3038.893 kb on + strand, within ECD_02898

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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3,036,324 + ECD_02895 0.29 -0.0
3,036,338 + ECD_02895 0.31 -0.8
3,036,449 + ECD_02895 0.54 +1.7
3,036,574 + ECD_02895 0.80 -2.3
3,036,574 + ECD_02895 0.80 +0.3
3,036,575 - ECD_02895 0.81 -1.0
3,036,621 + +0.0
3,036,622 - +2.2
3,036,622 - +1.3
3,036,646 - +0.3
3,036,687 + +0.2
3,036,861 + ECD_02896 0.36 +0.6
3,036,862 - ECD_02896 0.36 +0.7
3,036,865 - ECD_02896 0.37 -0.7
3,036,887 + ECD_02896 0.42 -0.4
3,036,887 + ECD_02896 0.42 -1.9
3,036,887 + ECD_02896 0.42 -3.0
3,036,888 - ECD_02896 0.42 -0.9
3,036,888 - ECD_02896 0.42 -1.1
3,036,888 - ECD_02896 0.42 -0.6
3,036,888 - ECD_02896 0.42 +0.3
3,036,888 - ECD_02896 0.42 +0.1
3,036,888 - ECD_02896 0.42 -0.3
3,036,967 + ECD_02896 0.63 -1.4
3,036,967 + ECD_02896 0.63 -1.3
3,036,968 - ECD_02896 0.63 -1.2
3,036,968 - ECD_02896 0.63 +0.0
3,037,085 - -0.5
3,037,094 - +0.2
3,037,117 + -1.8
3,037,150 + -2.2
3,037,151 - -0.0
3,037,204 + -0.2
3,037,204 + -2.6
3,037,216 + -0.9
3,037,241 + -1.3
3,037,241 + -1.8
3,037,242 - +0.8
3,037,242 - +0.9
3,037,281 + -1.0
3,037,282 - -2.3
3,037,325 - +1.2
3,037,327 + -1.0
3,037,328 - +2.0
3,037,355 - ECD_02897 0.14 +1.2
3,037,355 - ECD_02897 0.14 +0.7
3,037,385 + ECD_02897 0.18 -1.2
3,037,397 + ECD_02897 0.20 -0.3
3,037,397 + ECD_02897 0.20 -1.2
3,037,419 + ECD_02897 0.23 -1.0
3,037,419 + ECD_02897 0.23 -1.4
3,037,420 - ECD_02897 0.23 +1.2
3,037,528 - ECD_02897 0.40 +0.5
3,037,556 + ECD_02897 0.44 -1.4
3,037,557 - ECD_02897 0.44 +1.4
3,037,581 + ECD_02897 0.48 -0.3
3,037,581 + ECD_02897 0.48 -1.7
3,037,681 + ECD_02897 0.63 -1.2
3,037,682 - ECD_02897 0.63 +1.2
3,037,708 - ECD_02897 0.67 +0.8
3,037,800 - ECD_02897 0.81 -0.1
3,037,801 + ECD_02897 0.81 -0.8
3,037,802 - ECD_02897 0.81 +0.8
3,037,802 - ECD_02897 0.81 -1.8
3,037,825 + ECD_02897 0.85 -2.5
3,037,826 - ECD_02897 0.85 +1.2
3,037,885 + +0.1
3,037,898 - -0.8
3,037,898 - +1.5
3,037,912 - +0.7
3,037,912 - -2.0
3,037,941 + -0.9
3,037,974 - +2.7
3,038,084 + ECD_02898 0.12 +2.4
3,038,088 + ECD_02898 0.12 +2.0
3,038,241 + ECD_02898 0.24 +0.4
3,038,250 + ECD_02898 0.24 +0.4
3,038,250 + ECD_02898 0.24 +2.5
3,038,250 + ECD_02898 0.24 +2.5
3,038,250 + ECD_02898 0.24 +1.0
3,038,250 + ECD_02898 0.24 +2.0
3,038,250 + ECD_02898 0.24 +1.8
3,038,250 + ECD_02898 0.24 +3.2
3,038,250 + ECD_02898 0.24 +3.3
3,038,250 + ECD_02898 0.24 +2.4
3,038,250 + ECD_02898 0.24 -0.4
3,038,250 + ECD_02898 0.24 +2.2
3,038,250 + ECD_02898 0.24 +2.1
3,038,250 + ECD_02898 0.24 +3.0
3,038,250 + ECD_02898 0.24 +2.1
3,038,250 + ECD_02898 0.24 +3.7
3,038,251 - ECD_02898 0.24 +2.5
3,038,251 - ECD_02898 0.24 +2.6
3,038,254 + ECD_02898 0.25 +0.2
3,038,254 + ECD_02898 0.25 +2.6
3,038,371 + ECD_02898 0.33 +1.3
3,038,371 + ECD_02898 0.33 +1.9
3,038,444 + ECD_02898 0.39 +2.5
3,038,459 + ECD_02898 0.40 +1.7
3,038,459 + ECD_02898 0.40 +2.1
3,038,462 + ECD_02898 0.40 +2.3
3,038,507 + ECD_02898 0.43 +2.6
3,038,511 + ECD_02898 0.44 +2.1
3,038,511 + ECD_02898 0.44 +2.0
3,038,511 + ECD_02898 0.44 +3.0
3,038,511 + ECD_02898 0.44 +2.3
3,038,511 + ECD_02898 0.44 +2.7
3,038,511 + ECD_02898 0.44 +3.2
3,038,511 + ECD_02898 0.44 +1.6
3,038,511 + ECD_02898 0.44 +2.4
3,038,511 + ECD_02898 0.44 +1.7
3,038,512 - ECD_02898 0.44 +2.3
3,038,641 - ECD_02898 0.53 +1.2
3,038,756 + ECD_02898 0.62 +2.4
3,038,756 + ECD_02898 0.62 +2.9
3,038,756 + ECD_02898 0.62 +3.3
3,038,889 + ECD_02898 0.72 -0.8
3,038,893 + ECD_02898 0.72 -3.5

Or see this region's nucleotide sequence