Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02895 and ECD_02896 are separated by 52 nucleotides ECD_02896 and ECD_02897 are separated by 151 nucleotides ECD_02897 and ECD_02898 overlap by 4 nucleotides
ECD_02895: ECD_02895 - transcriptional repressor for mcbR biofilm gene, at 3,036,186 to 3,036,668
_02895
ECD_02896: ECD_02896 - hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein, at 3,036,721 to 3,037,113
_02896
ECD_02897: ECD_02897 - quorum sensing DNA-binding response regulator in two-component regulatory system with QseC, at 3,037,265 to 3,037,924
_02897
ECD_02898: ECD_02898 - quorum sensing sensory histidine kinase in two-component regulatory system with QseB, at 3,037,921 to 3,039,270
_02898
Position (kb)
3037
3038 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3036.324 kb on + strand, within ECD_02895 at 3036.338 kb on + strand, within ECD_02895 at 3036.449 kb on + strand, within ECD_02895 at 3036.574 kb on + strand, within ECD_02895 at 3036.574 kb on + strand, within ECD_02895 at 3036.575 kb on - strand, within ECD_02895 at 3036.621 kb on + strand at 3036.622 kb on - strand at 3036.622 kb on - strand at 3036.646 kb on - strand at 3036.687 kb on + strand at 3036.861 kb on + strand, within ECD_02896 at 3036.862 kb on - strand, within ECD_02896 at 3036.865 kb on - strand, within ECD_02896 at 3036.887 kb on + strand, within ECD_02896 at 3036.887 kb on + strand, within ECD_02896 at 3036.887 kb on + strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.888 kb on - strand, within ECD_02896 at 3036.967 kb on + strand, within ECD_02896 at 3036.967 kb on + strand, within ECD_02896 at 3036.968 kb on - strand, within ECD_02896 at 3036.968 kb on - strand, within ECD_02896 at 3037.085 kb on - strand at 3037.094 kb on - strand at 3037.117 kb on + strand at 3037.150 kb on + strand at 3037.151 kb on - strand at 3037.204 kb on + strand at 3037.204 kb on + strand at 3037.216 kb on + strand at 3037.241 kb on + strand at 3037.241 kb on + strand at 3037.242 kb on - strand at 3037.242 kb on - strand at 3037.281 kb on + strand at 3037.282 kb on - strand at 3037.325 kb on - strand at 3037.327 kb on + strand at 3037.328 kb on - strand at 3037.355 kb on - strand, within ECD_02897 at 3037.355 kb on - strand, within ECD_02897 at 3037.385 kb on + strand, within ECD_02897 at 3037.397 kb on + strand, within ECD_02897 at 3037.397 kb on + strand, within ECD_02897 at 3037.419 kb on + strand, within ECD_02897 at 3037.419 kb on + strand, within ECD_02897 at 3037.420 kb on - strand, within ECD_02897 at 3037.528 kb on - strand, within ECD_02897 at 3037.556 kb on + strand, within ECD_02897 at 3037.557 kb on - strand, within ECD_02897 at 3037.581 kb on + strand, within ECD_02897 at 3037.581 kb on + strand, within ECD_02897 at 3037.681 kb on + strand, within ECD_02897 at 3037.682 kb on - strand, within ECD_02897 at 3037.708 kb on - strand, within ECD_02897 at 3037.800 kb on - strand, within ECD_02897 at 3037.801 kb on + strand, within ECD_02897 at 3037.802 kb on - strand, within ECD_02897 at 3037.802 kb on - strand, within ECD_02897 at 3037.825 kb on + strand, within ECD_02897 at 3037.826 kb on - strand, within ECD_02897 at 3037.885 kb on + strand at 3037.898 kb on - strand at 3037.898 kb on - strand at 3037.912 kb on - strand at 3037.912 kb on - strand at 3037.941 kb on + strand at 3037.974 kb on - strand at 3038.084 kb on + strand, within ECD_02898 at 3038.088 kb on + strand, within ECD_02898 at 3038.241 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.250 kb on + strand, within ECD_02898 at 3038.251 kb on - strand, within ECD_02898 at 3038.251 kb on - strand, within ECD_02898 at 3038.254 kb on + strand, within ECD_02898 at 3038.254 kb on + strand, within ECD_02898 at 3038.371 kb on + strand, within ECD_02898 at 3038.371 kb on + strand, within ECD_02898 at 3038.444 kb on + strand, within ECD_02898 at 3038.459 kb on + strand, within ECD_02898 at 3038.459 kb on + strand, within ECD_02898 at 3038.462 kb on + strand, within ECD_02898 at 3038.507 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.511 kb on + strand, within ECD_02898 at 3038.512 kb on - strand, within ECD_02898 at 3038.641 kb on - strand, within ECD_02898 at 3038.756 kb on + strand, within ECD_02898 at 3038.756 kb on + strand, within ECD_02898 at 3038.756 kb on + strand, within ECD_02898 at 3038.889 kb on + strand, within ECD_02898 at 3038.893 kb on + strand, within ECD_02898
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,036,324 + ECD_02895 0.29 -0.0 3,036,338 + ECD_02895 0.31 -0.8 3,036,449 + ECD_02895 0.54 +1.7 3,036,574 + ECD_02895 0.80 -2.3 3,036,574 + ECD_02895 0.80 +0.3 3,036,575 - ECD_02895 0.81 -1.0 3,036,621 + +0.0 3,036,622 - +2.2 3,036,622 - +1.3 3,036,646 - +0.3 3,036,687 + +0.2 3,036,861 + ECD_02896 0.36 +0.6 3,036,862 - ECD_02896 0.36 +0.7 3,036,865 - ECD_02896 0.37 -0.7 3,036,887 + ECD_02896 0.42 -0.4 3,036,887 + ECD_02896 0.42 -1.9 3,036,887 + ECD_02896 0.42 -3.0 3,036,888 - ECD_02896 0.42 -0.9 3,036,888 - ECD_02896 0.42 -1.1 3,036,888 - ECD_02896 0.42 -0.6 3,036,888 - ECD_02896 0.42 +0.3 3,036,888 - ECD_02896 0.42 +0.1 3,036,888 - ECD_02896 0.42 -0.3 3,036,967 + ECD_02896 0.63 -1.4 3,036,967 + ECD_02896 0.63 -1.3 3,036,968 - ECD_02896 0.63 -1.2 3,036,968 - ECD_02896 0.63 +0.0 3,037,085 - -0.5 3,037,094 - +0.2 3,037,117 + -1.8 3,037,150 + -2.2 3,037,151 - -0.0 3,037,204 + -0.2 3,037,204 + -2.6 3,037,216 + -0.9 3,037,241 + -1.3 3,037,241 + -1.8 3,037,242 - +0.8 3,037,242 - +0.9 3,037,281 + -1.0 3,037,282 - -2.3 3,037,325 - +1.2 3,037,327 + -1.0 3,037,328 - +2.0 3,037,355 - ECD_02897 0.14 +1.2 3,037,355 - ECD_02897 0.14 +0.7 3,037,385 + ECD_02897 0.18 -1.2 3,037,397 + ECD_02897 0.20 -0.3 3,037,397 + ECD_02897 0.20 -1.2 3,037,419 + ECD_02897 0.23 -1.0 3,037,419 + ECD_02897 0.23 -1.4 3,037,420 - ECD_02897 0.23 +1.2 3,037,528 - ECD_02897 0.40 +0.5 3,037,556 + ECD_02897 0.44 -1.4 3,037,557 - ECD_02897 0.44 +1.4 3,037,581 + ECD_02897 0.48 -0.3 3,037,581 + ECD_02897 0.48 -1.7 3,037,681 + ECD_02897 0.63 -1.2 3,037,682 - ECD_02897 0.63 +1.2 3,037,708 - ECD_02897 0.67 +0.8 3,037,800 - ECD_02897 0.81 -0.1 3,037,801 + ECD_02897 0.81 -0.8 3,037,802 - ECD_02897 0.81 +0.8 3,037,802 - ECD_02897 0.81 -1.8 3,037,825 + ECD_02897 0.85 -2.5 3,037,826 - ECD_02897 0.85 +1.2 3,037,885 + +0.1 3,037,898 - -0.8 3,037,898 - +1.5 3,037,912 - +0.7 3,037,912 - -2.0 3,037,941 + -0.9 3,037,974 - +2.7 3,038,084 + ECD_02898 0.12 +2.4 3,038,088 + ECD_02898 0.12 +2.0 3,038,241 + ECD_02898 0.24 +0.4 3,038,250 + ECD_02898 0.24 +0.4 3,038,250 + ECD_02898 0.24 +2.5 3,038,250 + ECD_02898 0.24 +2.5 3,038,250 + ECD_02898 0.24 +1.0 3,038,250 + ECD_02898 0.24 +2.0 3,038,250 + ECD_02898 0.24 +1.8 3,038,250 + ECD_02898 0.24 +3.2 3,038,250 + ECD_02898 0.24 +3.3 3,038,250 + ECD_02898 0.24 +2.4 3,038,250 + ECD_02898 0.24 -0.4 3,038,250 + ECD_02898 0.24 +2.2 3,038,250 + ECD_02898 0.24 +2.1 3,038,250 + ECD_02898 0.24 +3.0 3,038,250 + ECD_02898 0.24 +2.1 3,038,250 + ECD_02898 0.24 +3.7 3,038,251 - ECD_02898 0.24 +2.5 3,038,251 - ECD_02898 0.24 +2.6 3,038,254 + ECD_02898 0.25 +0.2 3,038,254 + ECD_02898 0.25 +2.6 3,038,371 + ECD_02898 0.33 +1.3 3,038,371 + ECD_02898 0.33 +1.9 3,038,444 + ECD_02898 0.39 +2.5 3,038,459 + ECD_02898 0.40 +1.7 3,038,459 + ECD_02898 0.40 +2.1 3,038,462 + ECD_02898 0.40 +2.3 3,038,507 + ECD_02898 0.43 +2.6 3,038,511 + ECD_02898 0.44 +2.1 3,038,511 + ECD_02898 0.44 +2.0 3,038,511 + ECD_02898 0.44 +3.0 3,038,511 + ECD_02898 0.44 +2.3 3,038,511 + ECD_02898 0.44 +2.7 3,038,511 + ECD_02898 0.44 +3.2 3,038,511 + ECD_02898 0.44 +1.6 3,038,511 + ECD_02898 0.44 +2.4 3,038,511 + ECD_02898 0.44 +1.7 3,038,512 - ECD_02898 0.44 +2.3 3,038,641 - ECD_02898 0.53 +1.2 3,038,756 + ECD_02898 0.62 +2.4 3,038,756 + ECD_02898 0.62 +2.9 3,038,756 + ECD_02898 0.62 +3.3 3,038,889 + ECD_02898 0.72 -0.8 3,038,893 + ECD_02898 0.72 -3.5
Or see this region's nucleotide sequence