Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02791 and ECD_02792 are separated by 27 nucleotides ECD_02792 and ECD_02793 are separated by 64 nucleotides ECD_02793 and ECD_02794 are separated by 201 nucleotides
ECD_02791: ECD_02791 - adenine DNA glycosylase, at 2,933,781 to 2,934,833
_02791
ECD_02792: ECD_02792 - oxidative damage protective factor for iron-sulfur proteins, at 2,934,861 to 2,935,136
_02792
ECD_02793: ECD_02793 - membrane-bound lytic murein transglycosylase C, at 2,935,201 to 2,936,280
_02793
ECD_02794: ECD_02794 - nucleoside transporter, at 2,936,482 to 2,937,738
_02794
Position (kb)
2935
2936
2937 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2934.225 kb on + strand, within ECD_02791 at 2934.225 kb on + strand, within ECD_02791 at 2934.225 kb on + strand, within ECD_02791 at 2934.226 kb on - strand, within ECD_02791 at 2934.226 kb on - strand, within ECD_02791 at 2934.266 kb on + strand, within ECD_02791 at 2934.272 kb on - strand, within ECD_02791 at 2934.272 kb on - strand, within ECD_02791 at 2934.320 kb on + strand, within ECD_02791 at 2934.356 kb on + strand, within ECD_02791 at 2934.404 kb on + strand, within ECD_02791 at 2934.404 kb on + strand, within ECD_02791 at 2934.405 kb on - strand, within ECD_02791 at 2934.422 kb on + strand, within ECD_02791 at 2934.422 kb on + strand, within ECD_02791 at 2934.423 kb on - strand, within ECD_02791 at 2934.423 kb on - strand, within ECD_02791 at 2934.491 kb on - strand, within ECD_02791 at 2934.493 kb on + strand, within ECD_02791 at 2934.511 kb on + strand, within ECD_02791 at 2934.511 kb on + strand, within ECD_02791 at 2934.511 kb on + strand, within ECD_02791 at 2934.512 kb on - strand, within ECD_02791 at 2934.555 kb on + strand, within ECD_02791 at 2934.555 kb on + strand, within ECD_02791 at 2934.555 kb on + strand, within ECD_02791 at 2934.555 kb on + strand, within ECD_02791 at 2934.656 kb on + strand, within ECD_02791 at 2934.657 kb on - strand, within ECD_02791 at 2934.657 kb on - strand, within ECD_02791 at 2934.676 kb on + strand, within ECD_02791 at 2934.676 kb on + strand, within ECD_02791 at 2934.677 kb on - strand, within ECD_02791 at 2934.680 kb on + strand, within ECD_02791 at 2934.681 kb on - strand, within ECD_02791 at 2934.681 kb on - strand, within ECD_02791 at 2934.681 kb on - strand, within ECD_02791 at 2934.690 kb on - strand, within ECD_02791 at 2934.690 kb on - strand, within ECD_02791 at 2934.747 kb on + strand at 2934.747 kb on + strand at 2934.747 kb on + strand at 2934.749 kb on + strand at 2934.750 kb on - strand at 2934.750 kb on - strand at 2934.754 kb on + strand at 2934.754 kb on + strand at 2934.881 kb on + strand at 2934.951 kb on + strand, within ECD_02792 at 2935.104 kb on - strand, within ECD_02792 at 2935.114 kb on - strand at 2935.115 kb on + strand at 2935.115 kb on + strand at 2935.116 kb on - strand at 2935.116 kb on - strand at 2935.171 kb on + strand at 2935.272 kb on + strand at 2935.276 kb on + strand at 2935.277 kb on - strand at 2935.277 kb on - strand at 2935.277 kb on - strand at 2935.342 kb on - strand, within ECD_02793 at 2935.342 kb on - strand, within ECD_02793 at 2935.402 kb on + strand, within ECD_02793 at 2935.414 kb on + strand, within ECD_02793 at 2935.449 kb on + strand, within ECD_02793 at 2935.449 kb on + strand, within ECD_02793 at 2935.455 kb on + strand, within ECD_02793 at 2935.455 kb on + strand, within ECD_02793 at 2935.456 kb on - strand, within ECD_02793 at 2935.456 kb on - strand, within ECD_02793 at 2935.509 kb on + strand, within ECD_02793 at 2935.556 kb on - strand, within ECD_02793 at 2935.573 kb on - strand, within ECD_02793 at 2935.601 kb on - strand, within ECD_02793 at 2935.669 kb on + strand, within ECD_02793 at 2935.670 kb on - strand, within ECD_02793 at 2935.713 kb on + strand, within ECD_02793 at 2935.713 kb on + strand, within ECD_02793 at 2935.714 kb on - strand, within ECD_02793 at 2935.720 kb on + strand, within ECD_02793 at 2935.720 kb on + strand, within ECD_02793 at 2935.774 kb on + strand, within ECD_02793 at 2935.774 kb on + strand, within ECD_02793 at 2935.774 kb on + strand, within ECD_02793 at 2935.775 kb on - strand, within ECD_02793 at 2935.807 kb on + strand, within ECD_02793 at 2935.839 kb on + strand, within ECD_02793 at 2935.839 kb on + strand, within ECD_02793 at 2935.840 kb on - strand, within ECD_02793 at 2935.898 kb on + strand, within ECD_02793 at 2935.910 kb on + strand, within ECD_02793 at 2935.911 kb on - strand, within ECD_02793 at 2935.911 kb on - strand, within ECD_02793 at 2935.917 kb on + strand, within ECD_02793 at 2935.917 kb on + strand, within ECD_02793 at 2935.918 kb on - strand, within ECD_02793 at 2935.998 kb on + strand, within ECD_02793 at 2936.041 kb on + strand, within ECD_02793 at 2936.041 kb on + strand, within ECD_02793 at 2936.042 kb on - strand, within ECD_02793 at 2936.096 kb on - strand, within ECD_02793 at 2936.140 kb on - strand, within ECD_02793 at 2936.160 kb on + strand, within ECD_02793 at 2936.160 kb on + strand, within ECD_02793 at 2936.188 kb on + strand at 2936.240 kb on - strand at 2936.240 kb on - strand at 2936.367 kb on + strand at 2936.491 kb on - strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.563 kb on + strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.564 kb on - strand at 2936.565 kb on + strand at 2936.565 kb on + strand at 2936.566 kb on - strand at 2936.566 kb on - strand at 2936.575 kb on - strand at 2936.599 kb on - strand at 2936.599 kb on - strand at 2936.599 kb on - strand at 2936.613 kb on + strand, within ECD_02794 at 2936.613 kb on + strand, within ECD_02794 at 2936.640 kb on + strand, within ECD_02794 at 2936.678 kb on + strand, within ECD_02794 at 2936.678 kb on + strand, within ECD_02794 at 2936.693 kb on + strand, within ECD_02794 at 2936.694 kb on - strand, within ECD_02794 at 2936.695 kb on + strand, within ECD_02794 at 2936.695 kb on + strand, within ECD_02794 at 2936.695 kb on + strand, within ECD_02794 at 2936.778 kb on - strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.797 kb on + strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.798 kb on - strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.799 kb on + strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.800 kb on - strand, within ECD_02794 at 2936.816 kb on + strand, within ECD_02794 at 2936.833 kb on + strand, within ECD_02794 at 2936.968 kb on + strand, within ECD_02794 at 2936.968 kb on + strand, within ECD_02794 at 2936.969 kb on - strand, within ECD_02794 at 2936.970 kb on + strand, within ECD_02794 at 2936.971 kb on - strand, within ECD_02794 at 2937.109 kb on - strand, within ECD_02794 at 2937.109 kb on - strand, within ECD_02794 at 2937.178 kb on - strand, within ECD_02794
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,934,225 + ECD_02791 0.42 +0.6 2,934,225 + ECD_02791 0.42 -0.1 2,934,225 + ECD_02791 0.42 -0.4 2,934,226 - ECD_02791 0.42 -0.0 2,934,226 - ECD_02791 0.42 +1.2 2,934,266 + ECD_02791 0.46 +2.0 2,934,272 - ECD_02791 0.47 +0.9 2,934,272 - ECD_02791 0.47 +1.2 2,934,320 + ECD_02791 0.51 -0.6 2,934,356 + ECD_02791 0.55 -0.7 2,934,404 + ECD_02791 0.59 +0.2 2,934,404 + ECD_02791 0.59 -1.1 2,934,405 - ECD_02791 0.59 -0.4 2,934,422 + ECD_02791 0.61 +1.0 2,934,422 + ECD_02791 0.61 +4.9 2,934,423 - ECD_02791 0.61 -0.0 2,934,423 - ECD_02791 0.61 -0.2 2,934,491 - ECD_02791 0.67 -0.9 2,934,493 + ECD_02791 0.68 +0.6 2,934,511 + ECD_02791 0.69 -0.1 2,934,511 + ECD_02791 0.69 -1.5 2,934,511 + ECD_02791 0.69 -1.2 2,934,512 - ECD_02791 0.69 +0.9 2,934,555 + ECD_02791 0.74 -0.7 2,934,555 + ECD_02791 0.74 -0.8 2,934,555 + ECD_02791 0.74 +0.1 2,934,555 + ECD_02791 0.74 -0.0 2,934,656 + ECD_02791 0.83 +0.4 2,934,657 - ECD_02791 0.83 +1.5 2,934,657 - ECD_02791 0.83 -0.6 2,934,676 + ECD_02791 0.85 +0.3 2,934,676 + ECD_02791 0.85 -0.5 2,934,677 - ECD_02791 0.85 +1.2 2,934,680 + ECD_02791 0.85 -0.5 2,934,681 - ECD_02791 0.85 +0.2 2,934,681 - ECD_02791 0.85 -0.3 2,934,681 - ECD_02791 0.85 -1.1 2,934,690 - ECD_02791 0.86 -2.2 2,934,690 - ECD_02791 0.86 +1.3 2,934,747 + -0.3 2,934,747 + -1.6 2,934,747 + -0.0 2,934,749 + -0.4 2,934,750 - -0.9 2,934,750 - +0.3 2,934,754 + +0.6 2,934,754 + -0.4 2,934,881 + -1.0 2,934,951 + ECD_02792 0.33 -0.4 2,935,104 - ECD_02792 0.88 +0.1 2,935,114 - +0.4 2,935,115 + -0.4 2,935,115 + +1.1 2,935,116 - -1.2 2,935,116 - -0.7 2,935,171 + -0.7 2,935,272 + -1.0 2,935,276 + -2.1 2,935,277 - -0.1 2,935,277 - +1.4 2,935,277 - -3.7 2,935,342 - ECD_02793 0.13 +0.5 2,935,342 - ECD_02793 0.13 -0.7 2,935,402 + ECD_02793 0.19 -2.9 2,935,414 + ECD_02793 0.20 +1.2 2,935,449 + ECD_02793 0.23 -2.1 2,935,449 + ECD_02793 0.23 -0.0 2,935,455 + ECD_02793 0.24 -0.6 2,935,455 + ECD_02793 0.24 +1.0 2,935,456 - ECD_02793 0.24 +0.9 2,935,456 - ECD_02793 0.24 -0.1 2,935,509 + ECD_02793 0.29 -1.1 2,935,556 - ECD_02793 0.33 +0.3 2,935,573 - ECD_02793 0.34 -2.0 2,935,601 - ECD_02793 0.37 -0.7 2,935,669 + ECD_02793 0.43 -1.0 2,935,670 - ECD_02793 0.43 -0.9 2,935,713 + ECD_02793 0.47 +0.5 2,935,713 + ECD_02793 0.47 -0.7 2,935,714 - ECD_02793 0.47 +1.6 2,935,720 + ECD_02793 0.48 +0.2 2,935,720 + ECD_02793 0.48 -1.3 2,935,774 + ECD_02793 0.53 +1.4 2,935,774 + ECD_02793 0.53 -2.8 2,935,774 + ECD_02793 0.53 -0.3 2,935,775 - ECD_02793 0.53 -1.8 2,935,807 + ECD_02793 0.56 +1.0 2,935,839 + ECD_02793 0.59 -1.0 2,935,839 + ECD_02793 0.59 -0.6 2,935,840 - ECD_02793 0.59 -2.2 2,935,898 + ECD_02793 0.65 +1.5 2,935,910 + ECD_02793 0.66 -0.3 2,935,911 - ECD_02793 0.66 -0.7 2,935,911 - ECD_02793 0.66 -1.5 2,935,917 + ECD_02793 0.66 +0.2 2,935,917 + ECD_02793 0.66 -0.0 2,935,918 - ECD_02793 0.66 -0.9 2,935,998 + ECD_02793 0.74 -1.3 2,936,041 + ECD_02793 0.78 -1.1 2,936,041 + ECD_02793 0.78 -0.0 2,936,042 - ECD_02793 0.78 -1.0 2,936,096 - ECD_02793 0.83 +0.7 2,936,140 - ECD_02793 0.87 -0.8 2,936,160 + ECD_02793 0.89 +1.6 2,936,160 + ECD_02793 0.89 +0.3 2,936,188 + -0.6 2,936,240 - -0.3 2,936,240 - -0.1 2,936,367 + -0.5 2,936,491 - -0.9 2,936,563 + -0.9 2,936,563 + -0.4 2,936,563 + -1.6 2,936,563 + -1.0 2,936,563 + -0.2 2,936,564 - -0.9 2,936,564 - -1.0 2,936,564 - +0.2 2,936,564 - -0.8 2,936,564 - -0.6 2,936,564 - -2.7 2,936,565 + +1.0 2,936,565 + -0.4 2,936,566 - -0.3 2,936,566 - +0.8 2,936,575 - +1.1 2,936,599 - +1.0 2,936,599 - +0.5 2,936,599 - +0.4 2,936,613 + ECD_02794 0.10 -0.0 2,936,613 + ECD_02794 0.10 -0.3 2,936,640 + ECD_02794 0.13 +0.4 2,936,678 + ECD_02794 0.16 +0.8 2,936,678 + ECD_02794 0.16 +0.2 2,936,693 + ECD_02794 0.17 -0.8 2,936,694 - ECD_02794 0.17 +0.4 2,936,695 + ECD_02794 0.17 +0.8 2,936,695 + ECD_02794 0.17 +1.3 2,936,695 + ECD_02794 0.17 -1.5 2,936,778 - ECD_02794 0.24 +0.9 2,936,797 + ECD_02794 0.25 -0.2 2,936,797 + ECD_02794 0.25 -0.5 2,936,797 + ECD_02794 0.25 +0.5 2,936,797 + ECD_02794 0.25 -1.4 2,936,797 + ECD_02794 0.25 -0.1 2,936,797 + ECD_02794 0.25 +0.4 2,936,798 - ECD_02794 0.25 +1.2 2,936,798 - ECD_02794 0.25 -0.2 2,936,798 - ECD_02794 0.25 -0.2 2,936,798 - ECD_02794 0.25 +1.4 2,936,799 + ECD_02794 0.25 +1.5 2,936,799 + ECD_02794 0.25 +0.3 2,936,799 + ECD_02794 0.25 +1.0 2,936,799 + ECD_02794 0.25 -0.6 2,936,800 - ECD_02794 0.25 +0.3 2,936,800 - ECD_02794 0.25 -1.3 2,936,800 - ECD_02794 0.25 +1.9 2,936,800 - ECD_02794 0.25 +0.9 2,936,816 + ECD_02794 0.27 +2.3 2,936,833 + ECD_02794 0.28 -0.7 2,936,968 + ECD_02794 0.39 -1.6 2,936,968 + ECD_02794 0.39 -1.5 2,936,969 - ECD_02794 0.39 +0.9 2,936,970 + ECD_02794 0.39 -1.2 2,936,971 - ECD_02794 0.39 -0.5 2,937,109 - ECD_02794 0.50 -0.3 2,937,109 - ECD_02794 0.50 +1.8 2,937,178 - ECD_02794 0.55 -0.3
Or see this region's nucleotide sequence