Strain Fitness in Escherichia coli BL21 around ECD_02475

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02474 and ECD_02475 are separated by 47 nucleotidesECD_02475 and ECD_02476 are separated by 206 nucleotidesECD_02476 and ECD_02477 are separated by 68 nucleotides ECD_02474: ECD_02474 - uracil-DNA-glycosylase, at 2,583,354 to 2,584,043 _02474 ECD_02475: ECD_02475 - putative methyltransferase, at 2,584,091 to 2,585,128 _02475 ECD_02476: ECD_02476 - thioredoxin 2, at 2,585,335 to 2,585,754 _02476 ECD_02477: ECD_02477 - DTW domain protein, at 2,585,823 to 2,586,521 _02477 Position (kb) 2584 2585 2586Strain fitness (log2 ratio) -2 -1 0 1 2at 2583.128 kb on - strandat 2583.129 kb on + strandat 2583.129 kb on + strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.130 kb on - strandat 2583.131 kb on + strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.132 kb on - strandat 2583.318 kb on + strandat 2583.323 kb on + strandat 2583.627 kb on - strand, within ECD_02474at 2583.630 kb on + strand, within ECD_02474at 2583.630 kb on + strand, within ECD_02474at 2583.630 kb on + strand, within ECD_02474at 2583.632 kb on + strand, within ECD_02474at 2583.647 kb on + strand, within ECD_02474at 2583.881 kb on + strand, within ECD_02474at 2584.022 kb on - strandat 2584.024 kb on + strandat 2584.231 kb on - strand, within ECD_02475at 2584.231 kb on - strand, within ECD_02475at 2584.511 kb on - strand, within ECD_02475at 2584.669 kb on - strand, within ECD_02475at 2584.669 kb on - strand, within ECD_02475at 2584.669 kb on - strand, within ECD_02475at 2585.050 kb on + strandat 2585.051 kb on - strandat 2585.083 kb on - strandat 2585.083 kb on - strandat 2585.083 kb on - strandat 2585.083 kb on - strandat 2585.215 kb on - strandat 2585.220 kb on - strandat 2585.220 kb on - strandat 2585.220 kb on - strandat 2585.224 kb on - strandat 2585.224 kb on - strandat 2585.267 kb on + strandat 2585.272 kb on - strandat 2585.272 kb on - strandat 2585.276 kb on + strandat 2585.276 kb on + strandat 2585.330 kb on + strandat 2585.330 kb on + strandat 2585.331 kb on - strandat 2585.334 kb on + strandat 2585.335 kb on - strandat 2585.335 kb on - strandat 2585.448 kb on + strand, within ECD_02476at 2585.492 kb on + strand, within ECD_02476at 2585.493 kb on - strand, within ECD_02476at 2585.649 kb on + strand, within ECD_02476at 2585.649 kb on + strand, within ECD_02476at 2585.653 kb on - strand, within ECD_02476at 2585.752 kb on + strandat 2585.822 kb on + strandat 2585.960 kb on + strand, within ECD_02477

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,583,128 - +0.2
2,583,129 + -1.0
2,583,129 + -1.4
2,583,130 - +0.2
2,583,130 - +0.8
2,583,130 - -0.2
2,583,130 - -0.5
2,583,130 - -0.2
2,583,130 - -1.0
2,583,131 + -1.1
2,583,132 - -0.4
2,583,132 - -1.7
2,583,132 - -0.4
2,583,132 - -2.2
2,583,132 - +0.2
2,583,318 + -1.8
2,583,323 + -1.3
2,583,627 - ECD_02474 0.40 -1.5
2,583,630 + ECD_02474 0.40 -1.3
2,583,630 + ECD_02474 0.40 +0.5
2,583,630 + ECD_02474 0.40 +0.8
2,583,632 + ECD_02474 0.40 -0.8
2,583,647 + ECD_02474 0.42 +1.0
2,583,881 + ECD_02474 0.76 +1.3
2,584,022 - -0.4
2,584,024 + -0.9
2,584,231 - ECD_02475 0.13 +0.4
2,584,231 - ECD_02475 0.13 +0.7
2,584,511 - ECD_02475 0.40 +0.2
2,584,669 - ECD_02475 0.56 -0.2
2,584,669 - ECD_02475 0.56 +0.1
2,584,669 - ECD_02475 0.56 +0.1
2,585,050 + -0.3
2,585,051 - -0.0
2,585,083 - -0.7
2,585,083 - -0.8
2,585,083 - +0.6
2,585,083 - -2.0
2,585,215 - -1.0
2,585,220 - +0.6
2,585,220 - +0.1
2,585,220 - +0.1
2,585,224 - -0.7
2,585,224 - +0.7
2,585,267 + -0.9
2,585,272 - -1.0
2,585,272 - -0.7
2,585,276 + -0.3
2,585,276 + +0.3
2,585,330 + -0.1
2,585,330 + +0.2
2,585,331 - +0.4
2,585,334 + +0.1
2,585,335 - +0.0
2,585,335 - +1.7
2,585,448 + ECD_02476 0.27 +0.9
2,585,492 + ECD_02476 0.37 -0.1
2,585,493 - ECD_02476 0.38 +0.1
2,585,649 + ECD_02476 0.75 +0.1
2,585,649 + ECD_02476 0.75 +0.5
2,585,653 - ECD_02476 0.76 +0.7
2,585,752 + -0.8
2,585,822 + +0.1
2,585,960 + ECD_02477 0.20 +2.1

Or see this region's nucleotide sequence