Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02394 and ECD_02395 are separated by 38 nucleotides ECD_02395 and ECD_02396 are separated by 351 nucleotides ECD_02396 and ECD_02397 are separated by 310 nucleotides
ECD_02394: ECD_02394 - exopolyphosphatase, at 2,489,595 to 2,491,136
_02394
ECD_02395: ECD_02395 - cyclic-di-GMP phosphodiesterase, anaerobic, at 2,491,175 to 2,493,418
_02395
ECD_02396: ECD_02396 - uncharacterized protein, at 2,493,770 to 2,493,961
_02396
ECD_02397: ECD_02397 - outer membrane integrity lipoprotein, at 2,494,272 to 2,494,790
_02397
Position (kb)
2491
2492
2493
2494 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2490.448 kb on + strand, within ECD_02394 at 2490.720 kb on - strand, within ECD_02394 at 2490.754 kb on - strand, within ECD_02394 at 2490.907 kb on + strand, within ECD_02394 at 2490.907 kb on + strand, within ECD_02394 at 2490.908 kb on - strand, within ECD_02394 at 2490.922 kb on + strand, within ECD_02394 at 2490.925 kb on + strand, within ECD_02394 at 2491.235 kb on - strand at 2491.246 kb on - strand at 2491.255 kb on + strand at 2491.255 kb on + strand at 2491.257 kb on + strand at 2491.258 kb on - strand at 2491.258 kb on - strand at 2491.309 kb on - strand at 2491.382 kb on - strand at 2491.394 kb on - strand at 2491.394 kb on - strand at 2491.649 kb on + strand, within ECD_02395 at 2491.727 kb on - strand, within ECD_02395 at 2491.965 kb on + strand, within ECD_02395 at 2491.966 kb on - strand, within ECD_02395 at 2492.033 kb on + strand, within ECD_02395 at 2492.052 kb on + strand, within ECD_02395 at 2492.056 kb on + strand, within ECD_02395 at 2492.056 kb on + strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.057 kb on - strand, within ECD_02395 at 2492.284 kb on - strand, within ECD_02395 at 2492.307 kb on + strand, within ECD_02395 at 2492.308 kb on - strand, within ECD_02395 at 2492.314 kb on + strand, within ECD_02395 at 2492.347 kb on - strand, within ECD_02395 at 2492.428 kb on - strand, within ECD_02395 at 2492.488 kb on - strand, within ECD_02395 at 2492.488 kb on - strand, within ECD_02395 at 2492.508 kb on - strand, within ECD_02395 at 2492.556 kb on + strand, within ECD_02395 at 2492.569 kb on - strand, within ECD_02395 at 2492.629 kb on + strand, within ECD_02395 at 2492.629 kb on + strand, within ECD_02395 at 2492.629 kb on + strand, within ECD_02395 at 2492.630 kb on - strand, within ECD_02395 at 2492.631 kb on + strand, within ECD_02395 at 2492.684 kb on - strand, within ECD_02395 at 2492.684 kb on - strand, within ECD_02395 at 2492.751 kb on - strand, within ECD_02395 at 2492.922 kb on - strand, within ECD_02395 at 2493.045 kb on - strand, within ECD_02395 at 2493.047 kb on - strand, within ECD_02395 at 2493.047 kb on - strand, within ECD_02395 at 2493.727 kb on + strand at 2493.731 kb on + strand at 2493.753 kb on - strand at 2493.831 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396 at 2493.872 kb on + strand, within ECD_02396
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,490,448 + ECD_02394 0.55 +1.7 2,490,720 - ECD_02394 0.73 +1.0 2,490,754 - ECD_02394 0.75 +0.2 2,490,907 + ECD_02394 0.85 +1.7 2,490,907 + ECD_02394 0.85 -0.5 2,490,908 - ECD_02394 0.85 -0.7 2,490,922 + ECD_02394 0.86 +0.4 2,490,925 + ECD_02394 0.86 +1.0 2,491,235 - -1.8 2,491,246 - +1.2 2,491,255 + -1.1 2,491,255 + +0.6 2,491,257 + -0.1 2,491,258 - -0.1 2,491,258 - +0.6 2,491,309 - -0.4 2,491,382 - +0.5 2,491,394 - -1.6 2,491,394 - +0.6 2,491,649 + ECD_02395 0.21 +1.3 2,491,727 - ECD_02395 0.25 -0.1 2,491,965 + ECD_02395 0.35 -0.4 2,491,966 - ECD_02395 0.35 -0.4 2,492,033 + ECD_02395 0.38 +1.5 2,492,052 + ECD_02395 0.39 +3.3 2,492,056 + ECD_02395 0.39 +0.7 2,492,056 + ECD_02395 0.39 -0.7 2,492,057 - ECD_02395 0.39 +2.1 2,492,057 - ECD_02395 0.39 +1.5 2,492,057 - ECD_02395 0.39 -0.6 2,492,057 - ECD_02395 0.39 -0.4 2,492,284 - ECD_02395 0.49 +0.6 2,492,307 + ECD_02395 0.50 -1.7 2,492,308 - ECD_02395 0.50 +0.8 2,492,314 + ECD_02395 0.51 +1.8 2,492,347 - ECD_02395 0.52 +1.5 2,492,428 - ECD_02395 0.56 -1.1 2,492,488 - ECD_02395 0.59 -0.2 2,492,488 - ECD_02395 0.59 -0.8 2,492,508 - ECD_02395 0.59 +0.4 2,492,556 + ECD_02395 0.62 +0.6 2,492,569 - ECD_02395 0.62 +0.1 2,492,629 + ECD_02395 0.65 +1.7 2,492,629 + ECD_02395 0.65 -0.1 2,492,629 + ECD_02395 0.65 +0.2 2,492,630 - ECD_02395 0.65 -1.5 2,492,631 + ECD_02395 0.65 +0.8 2,492,684 - ECD_02395 0.67 -0.2 2,492,684 - ECD_02395 0.67 -0.4 2,492,751 - ECD_02395 0.70 +1.7 2,492,922 - ECD_02395 0.78 +0.6 2,493,045 - ECD_02395 0.83 -0.8 2,493,047 - ECD_02395 0.83 -1.3 2,493,047 - ECD_02395 0.83 +1.0 2,493,727 + +3.3 2,493,731 + +1.0 2,493,753 - +1.2 2,493,831 + ECD_02396 0.32 +0.4 2,493,872 + ECD_02396 0.53 -2.0 2,493,872 + ECD_02396 0.53 +1.1 2,493,872 + ECD_02396 0.53 +0.3
Or see this region's nucleotide sequence