Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02247 and ECD_02248 are separated by 264 nucleotides ECD_02248 and ECD_02249 are separated by 158 nucleotides
ECD_02247: ECD_02247 - putative arabinose efflux transporter, at 2,326,195 to 2,327,373
_02247
ECD_02248: ECD_02248 - 3-oxoacyl-[acyl-carrier-protein] synthase I, at 2,327,638 to 2,328,858
_02248
ECD_02249: ECD_02249 - fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme, at 2,329,017 to 2,331,023
_02249
Position (kb)
2327
2328
2329 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2326.694 kb on - strand, within ECD_02247 at 2326.817 kb on - strand, within ECD_02247 at 2326.817 kb on - strand, within ECD_02247 at 2326.858 kb on - strand, within ECD_02247 at 2327.107 kb on + strand, within ECD_02247 at 2327.107 kb on + strand, within ECD_02247 at 2327.108 kb on - strand, within ECD_02247 at 2327.291 kb on + strand at 2327.291 kb on + strand at 2327.292 kb on - strand at 2327.292 kb on - strand at 2327.292 kb on - strand at 2327.292 kb on - strand at 2327.408 kb on - strand at 2327.630 kb on - strand at 2327.640 kb on - strand at 2328.883 kb on - strand at 2328.888 kb on - strand at 2328.888 kb on - strand at 2328.888 kb on - strand at 2328.945 kb on + strand at 2328.945 kb on + strand at 2328.948 kb on + strand at 2329.014 kb on + strand at 2329.034 kb on - strand at 2329.099 kb on - strand at 2329.291 kb on + strand, within ECD_02249 at 2329.646 kb on + strand, within ECD_02249 at 2329.646 kb on + strand, within ECD_02249 at 2329.647 kb on - strand, within ECD_02249 at 2329.760 kb on - strand, within ECD_02249 at 2329.835 kb on + strand, within ECD_02249
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,326,694 - ECD_02247 0.42 -0.0 2,326,817 - ECD_02247 0.53 +0.6 2,326,817 - ECD_02247 0.53 +4.1 2,326,858 - ECD_02247 0.56 +0.0 2,327,107 + ECD_02247 0.77 -1.4 2,327,107 + ECD_02247 0.77 +0.6 2,327,108 - ECD_02247 0.77 -0.4 2,327,291 + +0.7 2,327,291 + +0.5 2,327,292 - -0.6 2,327,292 - +0.6 2,327,292 - +0.9 2,327,292 - -1.5 2,327,408 - -0.2 2,327,630 - +0.6 2,327,640 - -1.3 2,328,883 - -1.2 2,328,888 - -1.0 2,328,888 - -2.5 2,328,888 - -1.5 2,328,945 + -0.8 2,328,945 + +0.7 2,328,948 + -0.4 2,329,014 + +0.3 2,329,034 - +1.8 2,329,099 - +0.7 2,329,291 + ECD_02249 0.14 +0.5 2,329,646 + ECD_02249 0.31 +0.7 2,329,646 + ECD_02249 0.31 -0.8 2,329,647 - ECD_02249 0.31 -2.1 2,329,760 - ECD_02249 0.37 -1.3 2,329,835 + ECD_02249 0.41 -0.7
Or see this region's nucleotide sequence