Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02072 and ECD_02073 are separated by 149 nucleotides ECD_02073 and ECD_02074 are separated by 2 nucleotides ECD_02074 and ECD_02075 are separated by 193 nucleotides
ECD_02072: ECD_02072 - cytidine/deoxycytidine deaminase, at 2,126,748 to 2,127,632
_02072
ECD_02073: ECD_02073 - DUF218 superfamily vancomycin high temperature exclusion protein, at 2,127,782 to 2,128,501
_02073
ECD_02074: ECD_02074 - DUF2542 family protein, at 2,128,504 to 2,128,743
_02074
ECD_02075: ECD_02075 - dihydropyrimidine dehydrogenase, NADH-dependent, subunit N, at 2,128,937 to 2,130,175
_02075
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-1
0
1 at 2126.814 kb on - strand at 2126.829 kb on + strand at 2127.119 kb on + strand, within ECD_02072 at 2127.226 kb on - strand, within ECD_02072 at 2127.263 kb on + strand, within ECD_02072 at 2127.363 kb on + strand, within ECD_02072 at 2127.364 kb on - strand, within ECD_02072 at 2127.364 kb on - strand, within ECD_02072 at 2127.369 kb on - strand, within ECD_02072 at 2127.410 kb on + strand, within ECD_02072 at 2127.501 kb on + strand, within ECD_02072 at 2127.630 kb on + strand at 2127.810 kb on + strand at 2127.882 kb on - strand, within ECD_02073 at 2127.882 kb on - strand, within ECD_02073 at 2127.883 kb on + strand, within ECD_02073 at 2127.884 kb on - strand, within ECD_02073 at 2127.884 kb on - strand, within ECD_02073 at 2127.975 kb on - strand, within ECD_02073 at 2128.010 kb on + strand, within ECD_02073 at 2128.035 kb on + strand, within ECD_02073 at 2128.315 kb on - strand, within ECD_02073
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,126,814 - +0.3 2,126,829 + +0.8 2,127,119 + ECD_02072 0.42 +0.2 2,127,226 - ECD_02072 0.54 +1.4 2,127,263 + ECD_02072 0.58 -0.8 2,127,363 + ECD_02072 0.69 -0.0 2,127,364 - ECD_02072 0.70 -0.9 2,127,364 - ECD_02072 0.70 -0.8 2,127,369 - ECD_02072 0.70 -1.0 2,127,410 + ECD_02072 0.75 -1.0 2,127,501 + ECD_02072 0.85 +1.2 2,127,630 + -0.7 2,127,810 + -0.3 2,127,882 - ECD_02073 0.14 -0.5 2,127,882 - ECD_02073 0.14 -0.1 2,127,883 + ECD_02073 0.14 +0.2 2,127,884 - ECD_02073 0.14 -1.0 2,127,884 - ECD_02073 0.14 -0.0 2,127,975 - ECD_02073 0.27 +0.4 2,128,010 + ECD_02073 0.32 +0.2 2,128,035 + ECD_02073 0.35 -0.6 2,128,315 - ECD_02073 0.74 +0.2
Or see this region's nucleotide sequence