Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01969 and ECD_01970 are separated by 273 nucleotides ECD_01970 and ECD_01971 are separated by 21 nucleotides ECD_01971 and ECD_01972 are separated by 91 nucleotides
ECD_01969: ECD_01969 - inner membrane protein, at 2,036,909 to 2,038,492
_01969
ECD_01970: ECD_01970 - suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein, at 2,038,766 to 2,040,619
_01970
ECD_01971: ECD_01971 - deoxycytidine triphosphate deaminase; dCTP deaminase, at 2,040,641 to 2,041,222
_01971
ECD_01972: ECD_01972 - uridine/cytidine kinase, at 2,041,314 to 2,041,955
_01972
Position (kb)
2038
2039
2040
2041 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2038.680 kb on - strand at 2038.680 kb on - strand at 2038.768 kb on - strand at 2038.768 kb on - strand at 2039.822 kb on - strand, within ECD_01970 at 2039.867 kb on - strand, within ECD_01970 at 2040.000 kb on - strand, within ECD_01970 at 2040.224 kb on - strand, within ECD_01970 at 2040.303 kb on - strand, within ECD_01970 at 2040.303 kb on - strand, within ECD_01970 at 2040.303 kb on - strand, within ECD_01970 at 2040.437 kb on - strand at 2040.437 kb on - strand at 2040.437 kb on - strand at 2040.518 kb on - strand at 2040.520 kb on - strand at 2040.520 kb on - strand at 2040.520 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 2,038,680 - -0.6 2,038,680 - +0.2 2,038,768 - -0.3 2,038,768 - +0.5 2,039,822 - ECD_01970 0.57 +2.9 2,039,867 - ECD_01970 0.59 +2.2 2,040,000 - ECD_01970 0.67 +3.1 2,040,224 - ECD_01970 0.79 +3.2 2,040,303 - ECD_01970 0.83 +2.4 2,040,303 - ECD_01970 0.83 +2.6 2,040,303 - ECD_01970 0.83 +3.6 2,040,437 - +3.4 2,040,437 - +2.6 2,040,437 - +3.8 2,040,518 - +3.4 2,040,520 - +2.8 2,040,520 - +2.4 2,040,520 - +2.6
Or see this region's nucleotide sequence