Strain Fitness in Escherichia coli BL21 around ECD_01970

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01969 and ECD_01970 are separated by 273 nucleotidesECD_01970 and ECD_01971 are separated by 21 nucleotidesECD_01971 and ECD_01972 are separated by 91 nucleotides ECD_01969: ECD_01969 - inner membrane protein, at 2,036,909 to 2,038,492 _01969 ECD_01970: ECD_01970 - suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein, at 2,038,766 to 2,040,619 _01970 ECD_01971: ECD_01971 - deoxycytidine triphosphate deaminase; dCTP deaminase, at 2,040,641 to 2,041,222 _01971 ECD_01972: ECD_01972 - uridine/cytidine kinase, at 2,041,314 to 2,041,955 _01972 Position (kb) 2038 2039 2040 2041Strain fitness (log2 ratio) -1 0 1 2 3 4at 2038.680 kb on - strandat 2038.680 kb on - strandat 2038.768 kb on - strandat 2038.768 kb on - strandat 2039.822 kb on - strand, within ECD_01970at 2039.867 kb on - strand, within ECD_01970at 2040.000 kb on - strand, within ECD_01970at 2040.224 kb on - strand, within ECD_01970at 2040.303 kb on - strand, within ECD_01970at 2040.303 kb on - strand, within ECD_01970at 2040.303 kb on - strand, within ECD_01970at 2040.437 kb on - strandat 2040.437 kb on - strandat 2040.437 kb on - strandat 2040.518 kb on - strandat 2040.520 kb on - strandat 2040.520 kb on - strandat 2040.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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2,038,680 - -0.6
2,038,680 - +0.2
2,038,768 - -0.3
2,038,768 - +0.5
2,039,822 - ECD_01970 0.57 +2.9
2,039,867 - ECD_01970 0.59 +2.2
2,040,000 - ECD_01970 0.67 +3.1
2,040,224 - ECD_01970 0.79 +3.2
2,040,303 - ECD_01970 0.83 +2.4
2,040,303 - ECD_01970 0.83 +2.6
2,040,303 - ECD_01970 0.83 +3.6
2,040,437 - +3.4
2,040,437 - +2.6
2,040,437 - +3.8
2,040,518 - +3.4
2,040,520 - +2.8
2,040,520 - +2.4
2,040,520 - +2.6

Or see this region's nucleotide sequence