Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01865 and ECD_01866 overlap by 26 nucleotides ECD_01866 and ECD_01867 are separated by 166 nucleotides ECD_01867 and ECD_01868 are separated by 14 nucleotides
ECD_01865: ECD_01865 - trehalose-6-phosphate synthase, at 1,925,330 to 1,926,754
_01865
ECD_01866: ECD_01866 - trehalose-6-phosphate phosphatase, biosynthetic, at 1,926,729 to 1,927,529
_01866
ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682
_01867
ECD_01868: ECD_01868 - L-arabinose ABC transporter ATPase, at 1,928,697 to 1,930,211
_01868
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1926.755 kb on - strand at 1927.102 kb on - strand, within ECD_01866 at 1927.247 kb on + strand, within ECD_01866 at 1927.248 kb on - strand, within ECD_01866 at 1927.248 kb on - strand, within ECD_01866 at 1927.395 kb on + strand, within ECD_01866 at 1927.410 kb on - strand, within ECD_01866 at 1927.588 kb on + strand at 1927.588 kb on + strand at 1927.588 kb on + strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.589 kb on - strand at 1927.773 kb on - strand at 1927.773 kb on - strand at 1928.088 kb on + strand, within ECD_01867 at 1928.296 kb on + strand, within ECD_01867 at 1928.646 kb on + strand at 1928.647 kb on - strand at 1928.895 kb on - strand, within ECD_01868 at 1928.895 kb on - strand, within ECD_01868 at 1929.106 kb on - strand, within ECD_01868 at 1929.128 kb on + strand, within ECD_01868 at 1929.243 kb on - strand, within ECD_01868 at 1929.387 kb on + strand, within ECD_01868 at 1929.550 kb on + strand, within ECD_01868 at 1929.619 kb on + strand, within ECD_01868 at 1929.622 kb on - strand, within ECD_01868
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,926,755 - +0.4 1,927,102 - ECD_01866 0.47 +0.2 1,927,247 + ECD_01866 0.65 +2.1 1,927,248 - ECD_01866 0.65 -1.5 1,927,248 - ECD_01866 0.65 +0.1 1,927,395 + ECD_01866 0.83 -0.8 1,927,410 - ECD_01866 0.85 -2.0 1,927,588 + -0.7 1,927,588 + +0.1 1,927,588 + +0.6 1,927,589 - -0.5 1,927,589 - -0.7 1,927,589 - -1.5 1,927,589 - -1.1 1,927,589 - -1.6 1,927,589 - -1.2 1,927,773 - +2.3 1,927,773 - +0.1 1,928,088 + ECD_01867 0.40 +0.9 1,928,296 + ECD_01867 0.61 +1.9 1,928,646 + +0.5 1,928,647 - -0.4 1,928,895 - ECD_01868 0.13 +0.2 1,928,895 - ECD_01868 0.13 +0.7 1,929,106 - ECD_01868 0.27 -0.3 1,929,128 + ECD_01868 0.28 +2.1 1,929,243 - ECD_01868 0.36 +1.3 1,929,387 + ECD_01868 0.46 -0.8 1,929,550 + ECD_01868 0.56 -0.5 1,929,619 + ECD_01868 0.61 +1.7 1,929,622 - ECD_01868 0.61 +0.1
Or see this region's nucleotide sequence