Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01820 and ECD_01821 are separated by 55 nucleotides ECD_01821 and ECD_01822 are separated by 36 nucleotides ECD_01822 and ECD_01823 are separated by 234 nucleotides
ECD_01820: ECD_01820 - phosphoribosylglycinamide formyltransferase 2, at 1,876,605 to 1,877,783
_01820
ECD_01821: ECD_01821 - KHG/KDPG aldolase; 2-dehydro-3-deoxy-phosphogluconate/4-hydroxy-2- oxoglutarate aldolase, at 1,877,839 to 1,878,480
_01821
ECD_01822: ECD_01822 - 6-phosphogluconate dehydratase, at 1,878,517 to 1,880,328
_01822
ECD_01823: ECD_01823 - glucose-6-phosphate 1-dehydrogenase, at 1,880,563 to 1,882,038
_01823
Position (kb)
1878
1879
1880
1881 Strain fitness (log2 ratio)
-1
0
1 at 1877.858 kb on - strand at 1877.992 kb on - strand, within ECD_01821 at 1878.149 kb on - strand, within ECD_01821 at 1878.741 kb on - strand, within ECD_01822 at 1878.763 kb on - strand, within ECD_01822 at 1878.865 kb on - strand, within ECD_01822 at 1878.958 kb on - strand, within ECD_01822 at 1879.165 kb on - strand, within ECD_01822 at 1879.339 kb on + strand, within ECD_01822 at 1879.659 kb on - strand, within ECD_01822 at 1879.686 kb on - strand, within ECD_01822 at 1879.686 kb on - strand, within ECD_01822 at 1879.949 kb on - strand, within ECD_01822 at 1880.262 kb on - strand at 1880.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,877,858 - -1.3 1,877,992 - ECD_01821 0.24 +0.5 1,878,149 - ECD_01821 0.48 -0.9 1,878,741 - ECD_01822 0.12 -0.4 1,878,763 - ECD_01822 0.14 -1.0 1,878,865 - ECD_01822 0.19 +0.0 1,878,958 - ECD_01822 0.24 -0.2 1,879,165 - ECD_01822 0.36 +0.5 1,879,339 + ECD_01822 0.45 +1.7 1,879,659 - ECD_01822 0.63 +0.0 1,879,686 - ECD_01822 0.65 +0.7 1,879,686 - ECD_01822 0.65 +1.3 1,879,949 - ECD_01822 0.79 +0.9 1,880,262 - -0.9 1,880,262 - +1.0
Or see this region's nucleotide sequence