Strain Fitness in Escherichia coli BL21 around ECD_01737

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01736 and ECD_01737 are separated by 10 nucleotidesECD_01737 and ECD_01738 are separated by 92 nucleotides ECD_01736: ECD_01736 - cytoplasmic L-asparaginase 1, at 1,795,236 to 1,796,252 _01736 ECD_01737: ECD_01737 - nicotinamidase/pyrazinamidase, at 1,796,263 to 1,796,904 _01737 ECD_01738: ECD_01738 - putative MFS sugar transporter, membrane protein, at 1,796,997 to 1,798,355 _01738 Position (kb) 1796 1797Strain fitness (log2 ratio) -1 0 1at 1795.305 kb on + strandat 1795.306 kb on - strandat 1795.308 kb on - strandat 1795.328 kb on - strandat 1795.397 kb on + strand, within ECD_01736at 1795.521 kb on + strand, within ECD_01736at 1795.793 kb on + strand, within ECD_01736at 1796.054 kb on + strand, within ECD_01736at 1796.251 kb on - strandat 1796.261 kb on + strandat 1796.261 kb on + strandat 1796.262 kb on - strandat 1796.473 kb on - strand, within ECD_01737at 1796.549 kb on + strand, within ECD_01737at 1796.549 kb on + strand, within ECD_01737at 1796.870 kb on - strandat 1797.260 kb on - strand, within ECD_01738

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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1,795,305 + +1.6
1,795,306 - -0.5
1,795,308 - -1.7
1,795,328 - +0.1
1,795,397 + ECD_01736 0.16 -0.4
1,795,521 + ECD_01736 0.28 +0.3
1,795,793 + ECD_01736 0.55 +0.9
1,796,054 + ECD_01736 0.80 -0.3
1,796,251 - -0.3
1,796,261 + -0.2
1,796,261 + -0.0
1,796,262 - -1.2
1,796,473 - ECD_01737 0.33 -0.9
1,796,549 + ECD_01737 0.45 -0.5
1,796,549 + ECD_01737 0.45 -0.1
1,796,870 - -0.8
1,797,260 - ECD_01738 0.19 +0.3

Or see this region's nucleotide sequence