Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01277 and ECD_01278 are separated by 1 nucleotides ECD_01278 and ECD_01279 are separated by 37 nucleotides
ECD_01277: ECD_01277 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase, at 1,349,109 to 1,350,596
_01277
ECD_01278: ECD_01278 - gamma-glutamylputrescine oxidoreductase, at 1,350,598 to 1,351,878
_01278
ECD_01279: ECD_01279 - 4-aminobutyrate aminotransferase, PLP-dependent, at 1,351,916 to 1,353,181
_01279
Position (kb)
1350
1351
1352 Strain fitness (log2 ratio)
-1
0
1
2 at 1350.073 kb on + strand, within ECD_01277 at 1350.170 kb on + strand, within ECD_01277 at 1350.287 kb on - strand, within ECD_01277 at 1350.505 kb on - strand at 1350.619 kb on + strand at 1350.622 kb on + strand at 1350.826 kb on + strand, within ECD_01278 at 1351.102 kb on + strand, within ECD_01278 at 1351.201 kb on + strand, within ECD_01278 at 1351.202 kb on - strand, within ECD_01278 at 1351.508 kb on - strand, within ECD_01278 at 1351.508 kb on - strand, within ECD_01278 at 1351.635 kb on + strand, within ECD_01278 at 1351.672 kb on + strand, within ECD_01278 at 1351.847 kb on - strand at 1352.039 kb on + strand at 1352.340 kb on - strand, within ECD_01279 at 1352.418 kb on + strand, within ECD_01279 at 1352.419 kb on - strand, within ECD_01279 at 1352.521 kb on + strand, within ECD_01279 at 1352.611 kb on + strand, within ECD_01279
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 1,350,073 + ECD_01277 0.65 -0.7 1,350,170 + ECD_01277 0.71 +0.4 1,350,287 - ECD_01277 0.79 +1.2 1,350,505 - +1.2 1,350,619 + +0.8 1,350,622 + -0.7 1,350,826 + ECD_01278 0.18 +2.5 1,351,102 + ECD_01278 0.39 +0.6 1,351,201 + ECD_01278 0.47 +0.6 1,351,202 - ECD_01278 0.47 +0.1 1,351,508 - ECD_01278 0.71 -0.7 1,351,508 - ECD_01278 0.71 +1.0 1,351,635 + ECD_01278 0.81 +0.0 1,351,672 + ECD_01278 0.84 +0.2 1,351,847 - +0.1 1,352,039 + +0.8 1,352,340 - ECD_01279 0.33 +0.0 1,352,418 + ECD_01279 0.40 +0.4 1,352,419 - ECD_01279 0.40 +0.0 1,352,521 + ECD_01279 0.48 -0.0 1,352,611 + ECD_01279 0.55 -0.5
Or see this region's nucleotide sequence