Strain Fitness in Escherichia coli BL21 around ECD_00393

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00391 and ECD_00392 are separated by 208 nucleotidesECD_00392 and ECD_00393 are separated by 191 nucleotidesECD_00393 and ECD_00394 are separated by 150 nucleotidesECD_00394 and ECD_00395 are separated by 105 nucleotides ECD_00391: ECD_00391 - DNA-binding ATP-dependent protease La, at 427,922 to 430,276 _00391 ECD_00392: ECD_00392 - HU, DNA-binding transcriptional regulator, beta subunit, at 430,485 to 430,757 _00392 ECD_00393: ECD_00393 - periplasmic folding chaperone, has an inactive PPIase domain, at 430,949 to 432,820 _00393 ECD_00394: ECD_00394 - putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein, at 432,971 to 433,342 _00394 ECD_00395: ECD_00395 - long-chain acyl-CoA thioesterase III, at 433,448 to 433,846 _00395 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 429.970 kb on + strand, within ECD_00391at 429.970 kb on + strand, within ECD_00391at 429.971 kb on - strand, within ECD_00391at 429.971 kb on - strand, within ECD_00391at 430.173 kb on + strandat 430.173 kb on + strandat 430.173 kb on + strandat 430.358 kb on + strandat 430.359 kb on - strandat 430.386 kb on - strandat 430.398 kb on - strandat 430.418 kb on - strandat 430.419 kb on + strandat 430.419 kb on + strandat 430.420 kb on - strandat 430.420 kb on - strandat 430.436 kb on + strandat 430.490 kb on + strandat 430.565 kb on + strand, within ECD_00392at 430.565 kb on + strand, within ECD_00392at 430.565 kb on + strand, within ECD_00392at 430.566 kb on - strand, within ECD_00392at 430.566 kb on - strand, within ECD_00392at 430.568 kb on + strand, within ECD_00392at 430.568 kb on + strand, within ECD_00392at 430.609 kb on + strand, within ECD_00392at 430.609 kb on + strand, within ECD_00392at 430.609 kb on + strand, within ECD_00392at 430.706 kb on + strand, within ECD_00392at 430.730 kb on + strandat 430.730 kb on + strandat 430.755 kb on + strandat 430.755 kb on + strandat 430.801 kb on + strandat 430.801 kb on + strandat 430.818 kb on + strandat 430.943 kb on + strandat 431.069 kb on + strandat 431.069 kb on + strandat 431.470 kb on + strand, within ECD_00393at 431.711 kb on + strand, within ECD_00393at 432.048 kb on + strand, within ECD_00393at 432.048 kb on + strand, within ECD_00393at 432.818 kb on + strandat 432.949 kb on + strandat 432.985 kb on + strandat 432.986 kb on - strandat 433.075 kb on - strand, within ECD_00394at 433.120 kb on - strand, within ECD_00394at 433.165 kb on + strand, within ECD_00394at 433.165 kb on + strand, within ECD_00394at 433.238 kb on + strand, within ECD_00394at 433.251 kb on - strand, within ECD_00394at 433.404 kb on + strandat 433.404 kb on + strandat 433.408 kb on + strandat 433.408 kb on + strandat 433.409 kb on - strandat 433.409 kb on - strandat 433.409 kb on - strandat 433.411 kb on - strandat 433.420 kb on + strandat 433.420 kb on + strandat 433.420 kb on + strandat 433.422 kb on + strandat 433.433 kb on + strandat 433.433 kb on + strandat 433.434 kb on - strandat 433.491 kb on - strand, within ECD_00395at 433.621 kb on + strand, within ECD_00395at 433.621 kb on + strand, within ECD_00395at 433.621 kb on + strand, within ECD_00395at 433.621 kb on + strand, within ECD_00395at 433.621 kb on + strand, within ECD_00395at 433.621 kb on + strand, within ECD_00395at 433.622 kb on - strand, within ECD_00395at 433.622 kb on - strand, within ECD_00395at 433.622 kb on - strand, within ECD_00395at 433.622 kb on - strand, within ECD_00395at 433.657 kb on - strand, within ECD_00395at 433.660 kb on + strand, within ECD_00395at 433.661 kb on - strand, within ECD_00395at 433.661 kb on - strand, within ECD_00395at 433.664 kb on - strand, within ECD_00395at 433.664 kb on - strand, within ECD_00395at 433.704 kb on + strand, within ECD_00395at 433.717 kb on + strand, within ECD_00395at 433.780 kb on + strand, within ECD_00395

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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429,970 + ECD_00391 0.87 -0.1
429,970 + ECD_00391 0.87 +0.1
429,971 - ECD_00391 0.87 -1.3
429,971 - ECD_00391 0.87 -0.5
430,173 + -0.1
430,173 + -1.8
430,173 + -2.7
430,358 + -1.3
430,359 - -0.7
430,386 - +0.5
430,398 - -1.1
430,418 - -2.4
430,419 + -2.7
430,419 + -2.4
430,420 - -1.7
430,420 - -2.4
430,436 + -3.5
430,490 + -2.8
430,565 + ECD_00392 0.29 -1.8
430,565 + ECD_00392 0.29 -1.5
430,565 + ECD_00392 0.29 -1.6
430,566 - ECD_00392 0.30 -0.3
430,566 - ECD_00392 0.30 -1.7
430,568 + ECD_00392 0.30 -3.0
430,568 + ECD_00392 0.30 -0.9
430,609 + ECD_00392 0.45 -4.4
430,609 + ECD_00392 0.45 -2.6
430,609 + ECD_00392 0.45 -3.6
430,706 + ECD_00392 0.81 -2.4
430,730 + -2.9
430,730 + -3.2
430,755 + -2.2
430,755 + -2.5
430,801 + -3.7
430,801 + -2.9
430,818 + -0.2
430,943 + +0.6
431,069 + -0.4
431,069 + -0.4
431,470 + ECD_00393 0.28 -2.4
431,711 + ECD_00393 0.41 -0.7
432,048 + ECD_00393 0.59 -1.4
432,048 + ECD_00393 0.59 -1.8
432,818 + +0.5
432,949 + +2.3
432,985 + +1.2
432,986 - -0.0
433,075 - ECD_00394 0.28 +0.5
433,120 - ECD_00394 0.40 -0.2
433,165 + ECD_00394 0.52 +1.2
433,165 + ECD_00394 0.52 -0.9
433,238 + ECD_00394 0.72 +1.2
433,251 - ECD_00394 0.75 -0.8
433,404 + -0.7
433,404 + -0.8
433,408 + +1.1
433,408 + -2.4
433,409 - -0.3
433,409 - -0.2
433,409 - -0.3
433,411 - +0.2
433,420 + +1.8
433,420 + +0.8
433,420 + -0.1
433,422 + +1.2
433,433 + +0.6
433,433 + -2.5
433,434 - +0.5
433,491 - ECD_00395 0.11 -0.5
433,621 + ECD_00395 0.43 +0.1
433,621 + ECD_00395 0.43 +1.0
433,621 + ECD_00395 0.43 +0.3
433,621 + ECD_00395 0.43 +0.4
433,621 + ECD_00395 0.43 +1.1
433,621 + ECD_00395 0.43 -0.2
433,622 - ECD_00395 0.44 -2.0
433,622 - ECD_00395 0.44 +0.5
433,622 - ECD_00395 0.44 +0.4
433,622 - ECD_00395 0.44 -0.2
433,657 - ECD_00395 0.52 +1.2
433,660 + ECD_00395 0.53 +0.7
433,661 - ECD_00395 0.53 +0.4
433,661 - ECD_00395 0.53 +0.2
433,664 - ECD_00395 0.54 -0.1
433,664 - ECD_00395 0.54 +0.8
433,704 + ECD_00395 0.64 +0.5
433,717 + ECD_00395 0.67 +0.6
433,780 + ECD_00395 0.83 +1.4

Or see this region's nucleotide sequence