Strain Fitness in Escherichia coli BL21 around ECD_00081

Experiment: EV116

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00079 and ECD_00080 are separated by 2 nucleotidesECD_00080 and ECD_00081 are separated by 179 nucleotidesECD_00081 and ECD_00082 are separated by 601 nucleotides ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159 _00079 ECD_00080: ECD_00080 - acetolactate synthase 3, small subunit, valine-sensitive, at 90,162 to 90,653 _00080 ECD_00081: ECD_00081 - transcriptional repressor-activator for carbon metabolism, at 90,833 to 91,837 _00081 ECD_00082: ECD_00082 - RsmH methytransferase inhibitor, at 92,439 to 92,897 _00082 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.900 kb on - strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.966 kb on - strand, within ECD_00079at 89.966 kb on - strand, within ECD_00079at 90.019 kb on - strandat 90.046 kb on - strandat 90.095 kb on - strandat 90.162 kb on - strandat 90.184 kb on + strandat 90.296 kb on + strand, within ECD_00080at 90.328 kb on + strand, within ECD_00080at 90.352 kb on + strand, within ECD_00080at 90.471 kb on - strand, within ECD_00080at 90.473 kb on + strand, within ECD_00080at 90.497 kb on + strand, within ECD_00080at 90.497 kb on + strand, within ECD_00080at 90.522 kb on - strand, within ECD_00080at 90.532 kb on + strand, within ECD_00080at 90.764 kb on - strandat 90.770 kb on + strandat 90.817 kb on + strandat 90.887 kb on + strandat 90.888 kb on - strandat 90.888 kb on - strandat 90.888 kb on - strandat 91.021 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.076 kb on + strand, within ECD_00081at 91.077 kb on - strand, within ECD_00081at 91.232 kb on + strand, within ECD_00081at 91.232 kb on + strand, within ECD_00081at 91.353 kb on + strand, within ECD_00081at 91.358 kb on - strand, within ECD_00081at 91.358 kb on - strand, within ECD_00081at 91.382 kb on + strand, within ECD_00081at 91.478 kb on + strand, within ECD_00081at 91.490 kb on + strand, within ECD_00081at 91.490 kb on + strand, within ECD_00081at 91.677 kb on + strand, within ECD_00081at 91.677 kb on + strand, within ECD_00081at 91.795 kb on + strandat 91.801 kb on + strandat 91.832 kb on - strandat 91.832 kb on - strandat 91.836 kb on - strandat 91.852 kb on + strandat 91.936 kb on + strandat 91.937 kb on - strandat 91.940 kb on - strandat 91.940 kb on - strandat 91.946 kb on - strandat 92.000 kb on + strandat 92.000 kb on + strandat 92.000 kb on + strandat 92.035 kb on + strandat 92.147 kb on + strandat 92.147 kb on + strandat 92.148 kb on - strandat 92.148 kb on - strandat 92.187 kb on - strandat 92.188 kb on + strandat 92.204 kb on + strandat 92.255 kb on + strandat 92.267 kb on + strandat 92.422 kb on + strandat 92.671 kb on + strand, within ECD_00082at 92.671 kb on + strand, within ECD_00082

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Per-strain Table

Position Strand Gene LocusTag Fraction EV116
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89,900 - ECD_00079 0.85 +0.9
89,923 + ECD_00079 0.86 +0.2
89,923 + ECD_00079 0.86 -0.9
89,923 + ECD_00079 0.86 -0.9
89,923 + ECD_00079 0.86 -0.5
89,923 + ECD_00079 0.86 +0.2
89,923 + ECD_00079 0.86 -0.1
89,923 + ECD_00079 0.86 -0.7
89,923 + ECD_00079 0.86 -0.7
89,924 - ECD_00079 0.86 +0.7
89,924 - ECD_00079 0.86 +0.5
89,924 - ECD_00079 0.86 +1.4
89,925 + ECD_00079 0.86 +0.1
89,925 + ECD_00079 0.86 +0.4
89,925 + ECD_00079 0.86 -1.5
89,926 - ECD_00079 0.86 -0.6
89,926 - ECD_00079 0.86 +0.7
89,926 - ECD_00079 0.86 +1.0
89,966 - ECD_00079 0.89 +0.2
89,966 - ECD_00079 0.89 -0.4
90,019 - -0.7
90,046 - -0.3
90,095 - -0.4
90,162 - +0.8
90,184 + -0.7
90,296 + ECD_00080 0.27 -1.7
90,328 + ECD_00080 0.34 -0.8
90,352 + ECD_00080 0.39 -2.3
90,471 - ECD_00080 0.63 -0.2
90,473 + ECD_00080 0.63 -0.1
90,497 + ECD_00080 0.68 -0.2
90,497 + ECD_00080 0.68 -2.0
90,522 - ECD_00080 0.73 -0.5
90,532 + ECD_00080 0.75 -0.2
90,764 - -1.9
90,770 + -1.6
90,817 + +0.6
90,887 + -0.0
90,888 - -0.7
90,888 - -1.3
90,888 - -0.3
91,021 + ECD_00081 0.19 -0.0
91,058 + ECD_00081 0.22 -1.9
91,058 + ECD_00081 0.22 -1.8
91,058 + ECD_00081 0.22 +0.8
91,076 + ECD_00081 0.24 -0.2
91,077 - ECD_00081 0.24 -1.0
91,232 + ECD_00081 0.40 -0.2
91,232 + ECD_00081 0.40 -0.9
91,353 + ECD_00081 0.52 +0.1
91,358 - ECD_00081 0.52 -1.3
91,358 - ECD_00081 0.52 +0.3
91,382 + ECD_00081 0.55 -1.1
91,478 + ECD_00081 0.64 -0.0
91,490 + ECD_00081 0.65 -1.6
91,490 + ECD_00081 0.65 -1.7
91,677 + ECD_00081 0.84 -0.9
91,677 + ECD_00081 0.84 -1.5
91,795 + -1.2
91,801 + +1.4
91,832 - +0.6
91,832 - +1.3
91,836 - -1.8
91,852 + -1.4
91,936 + +0.5
91,937 - -1.3
91,940 - -0.0
91,940 - -0.7
91,946 - -0.1
92,000 + -0.5
92,000 + +1.0
92,000 + -0.5
92,035 + +0.4
92,147 + +0.2
92,147 + -0.1
92,148 - -0.0
92,148 - +1.6
92,187 - -0.2
92,188 + -0.3
92,204 + +1.8
92,255 + -1.1
92,267 + +0.8
92,422 + -0.1
92,671 + ECD_00082 0.51 +0.9
92,671 + ECD_00082 0.51 -0.1

Or see this region's nucleotide sequence