Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03855 and ECD_t00074 are separated by 361 nucleotides ECD_t00074 and ECD_t00075 are separated by 8 nucleotides ECD_t00075 and ECD_t00076 are separated by 116 nucleotides ECD_t00076 and ECD_t00077 are separated by 6 nucleotides ECD_t00077 and ECD_03856 are separated by 114 nucleotides
ECD_03855: ECD_03855 - pantothenate kinase, at 4,082,127 to 4,083,077
_03855
ECD_t00074: ECD_t00074 - tRNA-Thr, at 4,083,439 to 4,083,514
_t00074
ECD_t00075: ECD_t00075 - tRNA-Tyr, at 4,083,523 to 4,083,607
_t00075
ECD_t00076: ECD_t00076 - tRNA-Gly, at 4,083,724 to 4,083,798
_t00076
ECD_t00077: ECD_t00077 - tRNA-Thr, at 4,083,805 to 4,083,880
_t00077
ECD_03856: ECD_03856 - translation elongation factor EF-Tu 2, at 4,083,995 to 4,085,179
_03856
Position (kb)
4083
4084 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4083.070 kb on - strand at 4083.071 kb on + strand at 4083.072 kb on - strand at 4083.077 kb on + strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.078 kb on - strand at 4083.098 kb on + strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.099 kb on - strand at 4083.190 kb on + strand at 4083.244 kb on - strand at 4083.431 kb on + strand at 4083.641 kb on + strand at 4083.641 kb on + strand at 4083.810 kb on + strand at 4083.812 kb on + strand at 4083.812 kb on + strand at 4083.812 kb on + strand at 4083.812 kb on + strand at 4083.824 kb on + strand, within ECD_t00077 at 4083.914 kb on + strand at 4083.970 kb on + strand at 4083.981 kb on + strand at 4084.045 kb on + strand at 4084.066 kb on + strand at 4084.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 4,083,070 - +0.8 4,083,071 + +3.3 4,083,072 - -0.2 4,083,077 + +4.1 4,083,078 - +0.8 4,083,078 - +0.6 4,083,078 - +1.0 4,083,078 - -0.3 4,083,078 - -0.2 4,083,078 - +1.3 4,083,078 - +0.1 4,083,078 - -0.7 4,083,098 + +3.0 4,083,099 - -0.4 4,083,099 - -0.0 4,083,099 - +0.4 4,083,099 - -0.2 4,083,099 - +0.5 4,083,190 + +1.1 4,083,244 - +0.1 4,083,431 + +0.2 4,083,641 + +2.4 4,083,641 + +3.1 4,083,810 + +4.4 4,083,812 + +3.0 4,083,812 + +2.9 4,083,812 + +4.1 4,083,812 + +3.7 4,083,824 + ECD_t00077 0.25 +3.3 4,083,914 + +2.0 4,083,970 + +4.2 4,083,981 + +2.9 4,084,045 + +3.9 4,084,066 + +1.8 4,084,066 + +3.4
Or see this region's nucleotide sequence