Experiment: EV116
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03129 and ECD_r00007 are separated by 228 nucleotides ECD_r00007 and ECD_t00059 are separated by 37 nucleotides ECD_t00059 and ECD_r00008 are separated by 12 nucleotides ECD_r00008 and ECD_r00009 are separated by 92 nucleotides
ECD_03129: ECD_03129 - putative amino acid ABC transporter ATPase, at 3,283,593 to 3,284,351
_03129
ECD_r00007: ECD_r00007 - 5S ribosomal RNA, at 3,284,580 to 3,284,699
_r00007
ECD_t00059: ECD_t00059 - tRNA-Thr, at 3,284,737 to 3,284,812
_t00059
ECD_r00008: ECD_r00008 - 5S ribosomal RNA, at 3,284,825 to 3,284,944
_r00008
ECD_r00009: ECD_r00009 - 23S ribosomal RNA, at 3,285,037 to 3,287,944
_r00009
Position (kb) 3284
3285 Strain fitness (log2 ratio) -1
0
1 at 3283.767 kb on - strand, within ECD_03129 at 3283.804 kb on + strand, within ECD_03129 at 3283.838 kb on + strand, within ECD_03129 at 3284.081 kb on + strand, within ECD_03129 at 3284.081 kb on + strand, within ECD_03129 at 3284.097 kb on - strand, within ECD_03129 at 3284.156 kb on + strand, within ECD_03129 at 3284.318 kb on + strand at 3284.777 kb on - strand, within ECD_t00059
Per-strain Table
Position Strand Gene LocusTag Fraction EV116 remove 3,283,767 - ECD_03129 0.23 +1.0 3,283,804 + ECD_03129 0.28 -1.0 3,283,838 + ECD_03129 0.32 +1.1 3,284,081 + ECD_03129 0.64 +1.2 3,284,081 + ECD_03129 0.64 +0.8 3,284,097 - ECD_03129 0.66 -0.6 3,284,156 + ECD_03129 0.74 -0.2 3,284,318 + +1.0 3,284,777 - ECD_t00059 0.53 +1.6
Or see this region's nucleotide sequence